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De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics

  • Catherine Adamidi
  • Yongbo Wang
  • Dominic Gruen
  • Guido Mastrobuoni
  • Xintian You
  • Dominic Tolle Matthias Dodt Sebastian D. Mackowiak Andreas Gogol-Doering Pinar Oenal Agnieszka Rybak Eric Ross Alejandro Sánchez Alvarado
  • ... [+8 authors] ...,
  • Stefan Kempa
  • Christoph Dieterich
  • Nikolaus Rajewsky
  • Wei Chen
  • First Published May 2, 2011
LETTER

Comparative sequence analysis of primate subtelomeres originating from a chromosome fission event

  • M. Katharine Rudd
  • RaeLynn M. Endicott
  • Cynthia Friedman
  • Megan Walker
  • Janet M. Young
  • Kazutoyo Osoegawa
  • Pieter J. de Jong
  • Eric D. Green
  • Barbara J. Trask
  • First Published October 24, 2008
LETTER

The amphioxus genome illuminates vertebrate origins and cephalochordate biology

  • Linda Z. Holland
  • Ricard Albalat
  • Kaoru Azumi
  • Èlia Benito-Gutiérrez
  • Matthew J. Blow
  • Marianne Bronner-Fraser Frederic Brunet Thomas Butts Simona Candiani Larry J. Dishaw David E.K. Ferrier Jordi Garcia-Fernàndez Jeremy J. Gibson-Brown Carmela Gissi Adam Godzik Finn Hallböök Dan Hirose Kazuyoshi Hosomichi Tetsuro Ikuta Hidetoshi Inoko Masanori Kasahara Jun Kasamatsu Takeshi Kawashima Ayuko Kimura Masaaki Kobayashi Zbynek Kozmik Kaoru Kubokawa Vincent Laudet Gary W. Litman Alice C. McHardy Daniel Meulemans Masaru Nonaka Robert P. Olinski Zeev Pancer Len A. Pennacchio Mario Pestarino Jonathan P. Rast Isidore Rigoutsos Marc Robinson-Rechavi Graeme Roch Hidetoshi Saiga Yasunori Sasakura Masanobu Satake Yutaka Satou Michael Schubert Nancy Sherwood Takashi Shiina Naohito Takatori Javier Tello Pavel Vopalensky Shuichi Wada Anlong Xu Yuzhen Ye Keita Yoshida Fumiko Yoshizaki Jr-Kai Yu Qing Zhang Christian M. Zmasek Pieter J. de Jong Kazutoyo Osoegawa
  • ... [+55 authors] ...,
  • Nicholas H. Putnam
  • Daniel S. Rokhsar
  • Noriyuki Satoh
  • Peter W.H. Holland
  • First Published June 18, 2008
RESOURCE

MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes

  • Brandi L. Cantarel
  • Ian Korf
  • Sofia M.C. Robb
  • Genis Parra
  • Eric Ross
  • Barry Moore
  • Carson Holt
  • Alejandro Sánchez Alvarado
  • Mark Yandell
  • First Published November 19, 2007
RESOURCE

Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21

  • Robert Lyle
  • Paola Prandini
  • Kazutoyo Osoegawa
  • Boudewijn ten Hallers
  • Sean Humphray
  • Baoli Zhu Eduardo Eyras Robert Castelo Christine P. Bird Sarantos Gagos Carol Scott Antony Cox Samuel Deutsch Catherine Ucla Marc Cruts Sophie Dahoun Xinwei She Frederique Bena Sheng-Yue Wang Christine Van Broeckhoven Evan E. Eichler Roderic Guigo
  • ... [+17 authors] ...,
  • Jane Rogers
  • Pieter J. de Jong
  • Alexandre Reymond
  • Stylianos E. Antonarakis
  • First Published September 25, 2007
LETTER

Human, Mouse, and Rat Genome Large-Scale Rearrangements: Stability Versus Speciation

  • Shaying Zhao
  • Jyoti Shetty
  • Lihua Hou
  • Arthur Delcher
  • Baoli Zhu
  • Kazutoyo Osoegawa
  • ... [+1 authors] ...,
  • Pieter de Jong
  • William C. Nierman
  • Robert L. Strausberg
  • Claire M. Fraser
  • First Published September 13, 2004
RESOURCE

Complete MHC Haplotype Sequencing for Common Disease Gene Mapping

  • C. Andrew Stewart
  • Roger Horton
  • Richard J.N. Allcock
  • Jennifer L. Ashurst
  • Alexey M. Atrazhev
  • Penny Coggill Ian Dunham Simon Forbes Karen Halls Joanna M.M. Howson Sean J. Humphray Sarah Hunt Andrew J. Mungall Kazutoyo Osoegawa Sophie Palmer Anne N. Roberts Jane Rogers Sarah Sims Yu Wang Laurens G. Wilming John F. Elliott Pieter J. de Jong
  • ... [+17 authors] ...,
  • Stephen Sawcer
  • John A. Todd
  • John Trowsdale
  • Stephan Beck
  • First Published May 12, 2004
RESOURCE

Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome

  • Martin Krzywinski
  • John Wallis
  • Claudia Gösele
  • Ian Bosdet
  • Readman Chiu
  • Tina Graves Oliver Hummel Dan Layman Carrie Mathewson Natasja Wye Baoli Zhu Derek Albracht Jennifer Asano Sarah Barber Mabel Brown-John Susanna Chan Steve Chand Alison Cloutier Jonathon Davito Chris Fjell Tony Gaige Detlev Ganten Noreen Girn Kurtis Guggenheimer Heinz Himmelbauer Thomas Kreitler Stephen Leach Darlene Lee Hans Lehrach Michael Mayo Kelly Mead Teika Olson Pawan Pandoh Anna-Liisa Prabhu Heesun Shin Simone Tänzer Jason Thompson Miranda Tsai Jason Walker George Yang Mandeep Sekhon LaDeana Hillier Heike Zimdahl Andre Marziali Kazutoyo Osoegawa Shaying Zhao Asim Siddiqui Pieter J. de Jong Wes Warren Elaine Mardis John D. McPherson Richard Wilson
  • ... [+47 authors] ...,
  • Norbert Hübner
  • Steven Jones
  • Marco Marra
  • Jacqueline Schein
  • First Published April 1, 2004
RESOURCE

BAC Resources for the Rat Genome Project

  • Kazutoyo Osoegawa
  • Baoli Zhu
  • Chung Li Shu
  • Teresa Ren
  • Qing Cao
  • Gery M. Vessere
  • ... [+1 authors] ...,
  • Michelle M. Lutz
  • Michael I. Jensen-Seaman
  • Shaying Zhao
  • Pieter J. de Jong
  • First Published April 1, 2004
LETTER

SIM2 Interval are Frequently Functional" > Noncoding Sequences Conserved in a Limited Number of Mammals in the SIM2 Interval are Frequently Functional

  • Kelly A. Frazer
  • Heng Tao
  • Kazutoyo Osoegawa
  • Pieter J. de Jong
  • Xiyin Chen
  • Mark F. Doherty
  • David R. Cox
  • First Published February 12, 2004
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