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Research

Somatic structural variant formation is guided by and influences genome architecture

Nikos Sidiropoulos
Balca R. Mardin
F. Germán Rodríguez-González
Ivan D. Bochkov
Shilpa Garg
Adrian M. Stütz
Jan O. Korbel
Erez Lieberman Aiden
Joachim Weischenfeldt

First Published February 17, 2022

Research

CTCF looping is established during gastrulation in medaka embryos

Ryohei Nakamura
Yuichi Motai
Masahiko Kumagai
Candice L. Wike
Haruyo Nishiyama
Yoichiro Nakatani Neva C. Durand Kaori Kondo Takashi Kondo Tatsuya Tsukahara Atsuko Shimada
... [+6 authors] ...,
Bradley R. Cairns
Erez Lieberman Aiden
Shinichi Morishita
Hiroyuki Takeda

First Published May 18, 2021

Research

Chromatin architecture transitions from zebrafish sperm through early embryogenesis

Candice L. Wike
Yixuan Guo
Mengyao Tan
Ryohei Nakamura
Dana Klatt Shaw
Noelia Díaz Aneasha F. Whittaker-Tademy Neva C. Durand Erez Lieberman Aiden
... [+4 authors] ...,
Juan M. Vaquerizas
David Grunwald
Hiroyuki Takeda
Bradley R. Cairns

First Published May 18, 2021

Method

C. elegans to mammals" > Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals

M. Jordan Rowley
Axel Poulet
Michael H. Nichols
Brianna J. Bixler
Adrian L. Sanborn
Elizabeth A. Brouhard Karen Hermetz
... [+2 authors] ...,
Hannah Linsenbaum
Gyorgyi Csankovszki
Erez Lieberman Aiden
Victor G. Corces

First Published March 3, 2020

Research

Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

Myungjin Jo
Ah Young Chung
Nozomu Yachie
Minchul Seo
Hyejin Jeon
Youngpyo Nam Yeojin Seo Eunmi Kim Quan Zhong
... [+4 authors] ...,
Marc Vidal
Hae Chul Park
Frederick P. Roth
Kyoungho Suk

First Published June 8, 2017

Method

An extended set of yeast-based functional assays accurately identifies human disease mutations

Song Sun
Fan Yang
Guihong Tan
Michael Costanzo
Rose Oughtred
Jodi Hirschman Chandra L. Theesfeld Pritpal Bansal Nidhi Sahni Song Yi Analyn Yu Tanya Tyagi Cathy Tie David E. Hill Marc Vidal
... [+10 authors] ...,
Brenda J. Andrews
Charles Boone
Kara Dolinski
Frederick P. Roth

First Published March 14, 2016

Resource

C. elegans ORFeome" > Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome

Kourosh Salehi-Ashtiani
Chenwei Lin
Tong Hao
Yun Shen
David Szeto
Xinping Yang Lila Ghamsari HanJoo Lee Changyu Fan Ryan R. Murray Stuart Milstein Nenad Svrzikapa
... [+7 authors] ...,
Michael E. Cusick
Frederick P. Roth
David E. Hill
Marc Vidal

First Published October 2, 2009

Resource

Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network

Gabriel Markson
Christina Kiel
Russell Hyde
Stephanie Brown
Panagoula Charalabous
Anja Bremm Jennifer Semple Jonathan Woodsmith Simon Duley Kourosh Salehi-Ashtiani Marc Vidal
... [+6 authors] ...,
David Komander
Luis Serrano
Paul Lehner
Christopher M. Sanderson

First Published June 23, 2009

Methods

Shifted Transversal Design smart-pooling for high coverage interactome mapping

Xiaofeng Xin
Jean-François Rual
Tomoko Hirozane-Kishikawa
David E. Hill
Marc Vidal
Charles Boone
Nicolas Thierry-Mieg

First Published May 15, 2009

LETTER

Saccharomyces cerevisiae predicted ORFeome" > Revisiting the Saccharomyces cerevisiae predicted ORFeome

Qian-Ru Li
Anne-Ruxandra Carvunis
Haiyuan Yu
Jing-Dong J. Han
Quan Zhong
Nicolas Simonis Stanley Tam Tong Hao Niels J. Klitgord Denis Dupuy Danny Mou Ilan Wapinski
... [+7 authors] ...,
Aviv Regev
David E. Hill
Michael E. Cusick
Marc Vidal

First Published May 23, 2008

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