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3C sites in poly(A) RNA" > Nanopore direct RNA sequencing reveals METTL2A-mediated m3C sites in poly(A) RNA

  • Shuhei Mitsutomi
  • Anzu Sugawara
  • Masahide Seki
  • Yutaka Suzuki
  • Sotaro Miyao
  • Haozhe Du
  • ... [+1 authors] ...,
  • Kenji Takahashi
  • Yusuke Mizukami
  • Kenzui Taniue
  • Nobuyoshi Akimitsu
  • First Published October 30, 2025

Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC

  • Byron J. Smith
  • Chunyu Zhao
  • Veronika Dubinkina
  • Xiaofan Jin
  • Liron Zahavi
  • Saar Shoer
  • Jacqueline Moltzau-Anderson
  • Eran Segal
  • Katherine S. Pollard
  • First Published April 10, 2025

Evaluation of strategies for evidence-driven genome annotation using long-read RNA-seq

  • Alejandro Paniagua
  • Cristina Agustín-García
  • Francisco J. Pardo-Palacios
  • Thomas Brown
  • Maite De Maria
  • Nancy D. Denslow
  • Camila J. Mazzoni
  • Ana Conesa
  • First Published December 23, 2024

Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants

  • Kazumasa Shirai
  • Mitsuhiko P. Sato
  • Ranko Nishi
  • Masahide Seki
  • Yutaka Suzuki
  • Kousuke Hanada
  • First Published May 18, 2021

Long-read sequencing for non-small-cell lung cancer genomes

  • Yoshitaka Sakamoto
  • Liu Xu
  • Masahide Seki
  • Toshiyuki T. Yokoyama
  • Masahiro Kasahara
  • Yukie Kashima Akihiro Ohashi Yoko Shimada Noriko Motoi Katsuya Tsuchihara Susumu S. Kobayashi
  • ... [+6 authors] ...,
  • Takashi Kohno
  • Yuichi Shiraishi
  • Ayako Suzuki
  • Yutaka Suzuki
  • First Published September 4, 2020

Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates

  • Kentaro Kawata
  • Hiroyasu Wakida
  • Toshimichi Yamada
  • Kenzui Taniue
  • Han Han
  • Masahide Seki
  • Yutaka Suzuki
  • Nobuyoshi Akimitsu
  • First Published August 25, 2020

Sequence determinants of polyadenylation-mediated regulation

  • Ilya Vainberg Slutskin
  • Adina Weinberger
  • Eran Segal
  • First Published September 17, 2019

Systematic interrogation of human promoters

  • Shira Weingarten-Gabbay
  • Ronit Nir
  • Shai Lubliner
  • Eilon Sharon
  • Yael Kalma
  • Adina Weinberger
  • Eran Segal
  • First Published January 8, 2019

Plasmodium falciparum" > Corrigendum: Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum

  • Junya Yamagishi
  • Anna Natori
  • Mohammed E.M. Tolba
  • Arthur E. Mongan
  • Chihiro Sugimoto
  • Toshiaki Katayama Shuichi Kawashima Wojciech Makalowski
  • ... [+3 authors] ...,
  • Ryuichiro Maeda
  • Yuki Eshita
  • Josef Tuda
  • Yutaka Suzuki
  • First Published August 1, 2018

Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes

  • Vedran Franke
  • Sravya Ganesh
  • Rosa Karlic
  • Radek Malik
  • Josef Pasulka
  • Filip Horvat Maja Kuzman Helena Fulka Marketa Cernohorska Jana Urbanova Eliska Svobodova Jun Ma Yutaka Suzuki
  • ... [+8 authors] ...,
  • Fugaku Aoki
  • Richard M. Schultz
  • Kristian Vlahovicek
  • Petr Svoboda
  • First Published May 18, 2017
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