Method
Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC
- First Published April 10, 2025
Research
Sequence determinants of polyadenylation-mediated regulation
- First Published September 17, 2019
Corrigendum
Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators
- First Published March 1, 2017
Research
Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators
- First Published December 13, 2016
Method
An extended set of yeast-based functional assays accurately identifies human disease mutations
- First Published March 14, 2016
Corrigendum
Corrigendum: Unraveling determinants of transcription factor binding outside the core binding site
- First Published September 1, 2015
Research
Core promoter sequence in yeast is a major determinant of expression level
- First Published May 12, 2015
Method
Unraveling determinants of transcription factor binding outside the core binding site
- First Published March 11, 2015
Research
Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters
- First Published October 7, 2014
Method
Probing the effect of promoters on noise in gene expression using thousands of designed sequences
- First Published July 16, 2014
Resource
Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach
- First Published August 15, 2013
Research
Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise
- First Published February 12, 2013
Research
Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters
- First Published October 18, 2011
Research
High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans
- First Published December 22, 2010
Research
p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy
- First Published August 17, 2010
Resource
Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome
- First Published October 2, 2009
Resource
Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network
- First Published June 23, 2009
Methods
Incorporating nucleosomes into thermodynamic models of transcription regulation
- First Published May 18, 2009
Methods
Shifted Transversal Design smart-pooling for high coverage interactome mapping
- First Published May 15, 2009
Methods
Systematic functional characterization of cis-regulatory motifs in human core promoters
- First Published February 6, 2008
RESOURCE
Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions
- First Published April 1, 2005
LETTER
New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones
- First Published February 1, 2005
PERSPECTIVE
ORFeome Cloning and Systems Biology: Standardized Mass Production of the Parts From the Parts-List
- First Published October 15, 2004
Insight/Outlook
Academia-Industry Collaboration: An Integral Element for Building “Omic” Resources
- First Published October 15, 2004
LETTER
C. elegans ORFeome Version 3.1: Increasing the Coverage of ORFeome Resources With Improved Gene Predictions
- First Published October 15, 2004
RESOURCE
Human ORFeome Version 1.1: A Platform for Reverse Proteomics
- First Published October 15, 2004
Methods
Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs
- First Published June 1, 2004
METHODS
Identification of Potential Interaction Networks Using Sequence-Based Searches for Conserved Protein-Protein Interactions or “Interologs”
- First Published December 1, 2001
METHODS
A Genetic Strategy to Eliminate Self-Activator Baits Prior to High-Throughput Yeast Two-Hybrid Screens
- First Published November 1, 1999