Method
Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC
- First Published April 10, 2025
Research
Sequence determinants of polyadenylation-mediated regulation
- First Published September 17, 2019
Research
Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice
- First Published March 29, 2017
Corrigendum
Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators
- First Published March 1, 2017
Research
Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators
- First Published December 13, 2016
Corrigendum
Corrigendum: Unraveling determinants of transcription factor binding outside the core binding site
- First Published September 1, 2015
Research
Core promoter sequence in yeast is a major determinant of expression level
- First Published May 12, 2015
Method
Unraveling determinants of transcription factor binding outside the core binding site
- First Published March 11, 2015
Research
Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters
- First Published October 7, 2014
Method
Probing the effect of promoters on noise in gene expression using thousands of designed sequences
- First Published July 16, 2014
Resource
Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach
- First Published August 15, 2013
Research
Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise
- First Published February 12, 2013
Research
Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters
- First Published October 18, 2011
Research
High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans
- First Published December 22, 2010
Research
p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy
- First Published August 17, 2010
Methods
Incorporating nucleosomes into thermodynamic models of transcription regulation
- First Published May 18, 2009
Methods
Systematic functional characterization of cis-regulatory motifs in human core promoters
- First Published February 6, 2008
LETTER
Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions
- First Published October 5, 2007
LETTER
Identification of clustered YY1 binding sites in imprinting control regions
- First Published June 7, 2006
LETTER
Evolutionary expansion and divergence in the ZNF91 subfamily of primate-specific zinc finger genes
- First Published April 10, 2006
Chicken Special/Resources
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
- First Published December 8, 2004
Chicken Special/Letters
Evolution and functional classification of vertebrate gene deserts
- First Published December 8, 2004
RESOURCE
zPicture: Dynamic Alignment and Visualization Tool for Analyzing Conservation Profiles
- First Published March 1, 2004
LETTER
Differential Expansion of Zinc-Finger Transcription Factor Loci in Homologous Human and Mouse Gene Clusters
- First Published May 12, 2003
REVIEW
Zooming in on the Human–Mouse Comparative Map: Genome Conservation Re-examined on a High-Resolution Scale
- First Published December 1, 1997
LETTER
The Human Homolog of a Mouse-Imprinted Gene, Peg3, Maps to a Zinc Finger Gene-Rich Region of Human Chromosome 19q13.4
- First Published May 1, 1997