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Method

Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC

  • Byron J. Smith
  • Chunyu Zhao
  • Veronika Dubinkina
  • Xiaofan Jin
  • Liron Zahavi
  • Saar Shoer
  • Jacqueline Moltzau-Anderson
  • Eran Segal
  • Katherine S. Pollard
  • First Published April 10, 2025
Research

Single-cell transcriptome and metagenome profiling reveals the genetic basis of rumen functions and convergent developmental patterns in ruminants

  • Juan Deng
  • Ya-Jing Liu
  • Wen-Tian Wei
  • Qi-Xuan Huang
  • Li-Ping Zhao
  • Ling-Yun Luo Qi Zhu Lin Zhang Yuan Chen Yan-Ling Ren Shan-Gang Jia Yu-Luan Lin Ji Yang Feng-Hua Lv
  • ... [+9 authors] ...,
  • Hong-Ping Zhang
  • Feng-E Li
  • Li Li
  • Meng-Hua Li
  • First Published October 26, 2023
Method

Targeted, programmable, and precise tandem duplication in the mammalian genome

  • Yaoge Jiao
  • Min Li
  • Xingyu He
  • Yanhong Wang
  • Junwei Song
  • Yun Hu Li Li Lifang Zhou Lurong Jiang
  • ... [+4 authors] ...,
  • Junyan Qu
  • Lifang Xie
  • Qiang Chen
  • Shaohua Yao
  • First Published June 9, 2023
Resource

Systematic genome editing of the genes on zebrafish Chromosome 1 by CRISPR/Cas9

  • Yonghua Sun
  • Bo Zhang
  • Lingfei Luo
  • De-Li Shi
  • Han Wang
  • Zongbin Cui Honghui Huang Ying Cao Xiaodong Shu Wenqing Zhang Jianfeng Zhou Yun Li Jiulin Du Qingshun Zhao Jun Chen Hanbing Zhong Tao P. Zhong Li Li Jing-Wei Xiong Jinrong Peng Wuhan Xiao Jian Zhang Jihua Yao Zhan Yin Xianming Mo Gang Peng Jun Zhu Yan Chen Yong Zhou Dong Liu Weijun Pan Yiyue Zhang Hua Ruan Feng Liu Zuoyan Zhu Anming Meng The ZAKOC Consortium Yonghua Sun Luyuan Pan Houpeng Wang Weixun Xie Mudan He Ding Ye Kuoyu Li Feng Xiong Liyue Liu Linglu Li Yun Zhang Bo Zhang Da Liu Zhenchao Cheng Yingying Hu Qian Wu Zhou Luo Yutian Zhang Yingdan Wu Wenyuan Li Lingfei Luo Jianlong Ma Dashuang Mo Pengcheng Cai Jinzi Chen Junhui Sun Yang Zhou Chuan Wu Rui Ni De-Li Shi Ming Shao Yan-Jun Zhang Li-Jun Feng Xiao-Ning Cheng Ji-Tong Li Yan-Yi Xing Yan Zhang Ya-Ping Meng Bei-Bei Yu Han Wang Jian Huang Shuqing Zhang Cheng Ji Yicheng Tan Jingjing Wang Fanmiao Zhang Mingyong Wang Guodong Huang Zhaomin Zhong Wei Zhang Zongbin Cui Yong Long Guili Song Xiaohui Li Xixi Li Kai Chen Jing Ren Junjun Yan Qing Li Honghui Huang Hua Ruan Shicheng Zhu Xuejiao Chen Jingjing Pan Faming Jiang Jiehui Chen Chao Huang Guoping Dong Xiaogui Yi Ying Cao Ruikun Hu Weilai Huang Jiangfang Liu Hong WangXiao Dong Shu Jianhong Xia Shaoyang Zhao Pengtao Wang Xiuhua Wu Wenqing Zhang Yiyue Zhang Mengchang Xu Wei Liu Zhibing Huang Qing Lin Mei Wu Jianfeng Zhou Aibo Sheng Peipei Tang Xiaoxia Gong Wei Mou Congcong Zu Yun Li Ling Lu Yunzhang Liu Xiaozhi Rong Jianyang Chen Jiulin Du Jiwen Bu Xufei Du Tingting Liu Shanye Gu Qingshun Zhao Zhangji Dong Xiaohua Dong Shasha Cao Yunyun Yue Chun Gu Meijing Liu Jun Chen Hongjian Gong Hanbing Zhong Xuanjun Yang Jiahao Chen Qiushi Xu Tao P. Zhong Daqin Jin Peilu She Jianjian Sun Kaa Seng Lai Li Li Yu Zhang Yanyan Shi Fangying Zhao Jing-Wei Xiong Meijun Pang Lu Gao Lei Lei Jinrong Peng Jane Lo Wuhan Xiao Xiaolian Cai Gang Ouyang Jian Zhang Weirui Ma Liyun Miao Jihua Yao Yu Hu Zhan Yin Xianming Mo Xue Li Gang Peng Cuizhen Zhang Fenghua Wang Jun Zhu Ruimeng Yang Hao Yuan Yan Chen Yi Pan Yong Zhou Dong Liu Feng Zhao Weijun Pan Feng Liu Yanyan Ding Yuanyuan Xue Lu Wang Yifan Zhang Dongyuan Ma Xinyan Lu Shuai Gao Jun Xia Zuoyan Zhu Anming Meng Xingfeng Liu Juhui Qiu Bo Gong Luxi Chen Cong Xiong Likun Yao
  • ... [+202 authors] ...,
  • Cencan Xing
  • Yixia Wang
  • Weimin Shen
  • Jiawei Sun
  • First Published December 12, 2019
Research

Sequence determinants of polyadenylation-mediated regulation

  • Ilya Vainberg Slutskin
  • Adina Weinberger
  • Eran Segal
  • First Published September 17, 2019
Research

Systematic interrogation of human promoters

  • Shira Weingarten-Gabbay
  • Ronit Nir
  • Shai Lubliner
  • Eilon Sharon
  • Yael Kalma
  • Adina Weinberger
  • Eran Segal
  • First Published January 8, 2019
Corrigendum

Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

  • David van Dijk
  • Eilon Sharon
  • Maya Lotan-Pompan
  • Adina Weinberger
  • Eran Segal
  • Lucas B. Carey
  • First Published March 1, 2017
Research

Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

  • David van Dijk
  • Eilon Sharon
  • Maya Lotan-Pompan
  • Adina Weinberger
  • Eran Segal
  • Lucas B. Carey
  • First Published December 13, 2016
Research

Noise in gene expression is coupled to growth rate

  • Leeat Keren
  • David van Dijk
  • Shira Weingarten-Gabbay
  • Dan Davidi
  • Ghil Jona
  • Adina Weinberger
  • Ron Milo
  • Eran Segal
  • First Published September 9, 2015
Corrigendum

Corrigendum: Unraveling determinants of transcription factor binding outside the core binding site

  • Michal Levo
  • Einat Zalckvar
  • Eilon Sharon
  • Ana Carolina Dantas Machado
  • Yael Kalma
  • Maya Lotan-Pompan
  • ... [+1 authors] ...,
  • Adina Weinberger
  • Zohar Yakhini
  • Remo Rohs
  • Eran Segal
  • First Published September 1, 2015
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