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Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC

  • Byron J. Smith
  • Chunyu Zhao
  • Veronika Dubinkina
  • Xiaofan Jin
  • Liron Zahavi
  • Saar Shoer
  • Jacqueline Moltzau-Anderson
  • Eran Segal
  • Katherine S. Pollard
  • First Published April 10, 2025

Simultaneous profiling of host expression and microbial abundance by spatial metatranscriptome sequencing

  • Lin Lyu
  • Xue Li
  • Ru Feng
  • Xin Zhou
  • Tuhin K. Guha
  • Xiaofei Yu Guo Qiang Chen Yufeng Yao
  • ... [+3 authors] ...,
  • Bing Su
  • Duowu Zou
  • Michael P. Snyder
  • Lei Chen
  • First Published March 27, 2023

Genomic analyses of wild argali, domestic sheep, and their hybrids provide insights into chromosome evolution, phenotypic variation, and germplasm innovation

  • Xin Li
  • San-Gang He
  • Wen-Rong Li
  • Ling-Yun Luo
  • Ze Yan
  • Dong-Xin Mo Xing Wan Feng-Hua Lv Ji Yang Ya-Xi Xu Juan Deng Qiang-Hui Zhu Xing-Long Xie Song-Song Xu Chen-Xi Liu Xin-Rong Peng Bin Han Zhong-Hui Li Lei Chen Jian-Lin Han Xue-Zhi Ding Renqing Dingkao Yue-Feng Chu Jin-Yan Wu
  • ... [+19 authors] ...,
  • Li-Min Wang
  • Ping Zhou
  • Ming-Jun Liu
  • Meng-Hua Li
  • First Published August 10, 2022

Precision environmental health monitoring by longitudinal exposome and multi-omics profiling

  • Peng Gao
  • Xiaotao Shen
  • Xinyue Zhang
  • Chao Jiang
  • Sai Zhang
  • Xin Zhou
  • Sophia Miryam Schüssler-Fiorenza Rose
  • Michael Snyder
  • First Published June 6, 2022

Sequence determinants of polyadenylation-mediated regulation

  • Ilya Vainberg Slutskin
  • Adina Weinberger
  • Eran Segal
  • First Published September 17, 2019

Systematic interrogation of human promoters

  • Shira Weingarten-Gabbay
  • Ronit Nir
  • Shai Lubliner
  • Eilon Sharon
  • Yael Kalma
  • Adina Weinberger
  • Eran Segal
  • First Published January 8, 2019

Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome

  • Hagen Tilgner
  • Fereshteh Jahanbani
  • Ishaan Gupta
  • Paul Collier
  • Eric Wei
  • Morten Rasmussen
  • Michael Snyder
  • First Published December 1, 2017

Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

  • David van Dijk
  • Eilon Sharon
  • Maya Lotan-Pompan
  • Adina Weinberger
  • Eran Segal
  • Lucas B. Carey
  • First Published March 1, 2017

Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

  • David van Dijk
  • Eilon Sharon
  • Maya Lotan-Pompan
  • Adina Weinberger
  • Eran Segal
  • Lucas B. Carey
  • First Published December 13, 2016

Comprehensive variation discovery and recovery of missing sequence in the pig genome using multiple de novo assemblies

  • Mingzhou Li
  • Lei Chen
  • Shilin Tian
  • Yu Lin
  • Qianzi Tang
  • Xuming Zhou Diyan Li Carol K.L. Yeung Tiandong Che Long Jin Yuhua Fu Jideng Ma Xun Wang Anan Jiang Jing Lan Qi Pan Yingkai Liu Zonggang Luo Zongyi Guo Haifeng Liu Li Zhu Surong Shuai Guoqing Tang Jiugang Zhao Yanzhi Jiang Lin Bai Shunhua Zhang Miaomiao Mai Changchun Li Dawei Wang Yiren Gu Guosong Wang Hongfeng Lu Yan Li Haihao Zhu Zongwen Li Ming Li Vadim N. Gladyshev Zhi Jiang
  • ... [+34 authors] ...,
  • Shuhong Zhao
  • Jinyong Wang
  • Ruiqiang Li
  • Xuewei Li
  • First Published September 19, 2016
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