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Research

Identification of genomic features that uniquely impact estrogen receptor alpha binding and its effects on gene expression in endometrial cancer

  • Alexandra Richey
  • Noel Kitchen
  • Craig M Rush
  • Jeffery M Vahrenkamp
  • Hosiana Abewe
  • Kyle S Osborne
  • ... [+1 authors] ...,
  • Alex J Bott
  • Brian K Dalley
  • Jared Rutter
  • Jason Gertz
  • First Published July 17, 2026
Method

Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC

  • Byron J. Smith
  • Chunyu Zhao
  • Veronika Dubinkina
  • Xiaofan Jin
  • Liron Zahavi
  • Saar Shoer
  • Jacqueline Moltzau-Anderson
  • Eran Segal
  • Katherine S. Pollard
  • First Published April 10, 2025
Research

Estrogen-induced chromatin looping changes identify a subset of functional regulatory elements

  • Hosiana Abewe
  • Alexandra Richey
  • Jeffery M. Vahrenkamp
  • Matthew Ginley-Hidinger
  • Craig M. Rush
  • Noel Kitchen
  • Xiaoyang Zhang
  • Jason Gertz
  • First Published March 3, 2025
Research

Comparative transcriptomics of primary cells in vertebrates

  • Tanvir Alam
  • Saumya Agrawal
  • Jessica Severin
  • Robert S. Young
  • Robin Andersson
  • Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
  • ... [+16 authors] ...,
  • Levon M. Khachigian
  • Yoshihide Hayashizaki
  • Piero Carninci
  • Michiel J.L. de Hoon
  • First Published July 27, 2020
Method

FFPEcap-seq: a method for sequencing capped RNAs in formalin-fixed paraffin-embedded samples

  • Jeffery M. Vahrenkamp
  • Kathryn Szczotka
  • Mark K. Dodson
  • Elke A. Jarboe
  • Andrew P. Soisson
  • Jason Gertz
  • First Published October 24, 2019
Research

Sequence determinants of polyadenylation-mediated regulation

  • Ilya Vainberg Slutskin
  • Adina Weinberger
  • Eran Segal
  • First Published September 17, 2019
Research

Estrogen-independent molecular actions of mutant estrogen receptor 1 in endometrial cancer

  • Zannel Blanchard
  • Jeffery M. Vahrenkamp
  • Kristofer C. Berrett
  • Spencer Arnesen
  • Jason Gertz
  • First Published July 30, 2019
Research

Systematic interrogation of human promoters

  • Shira Weingarten-Gabbay
  • Ronit Nir
  • Shai Lubliner
  • Eilon Sharon
  • Yael Kalma
  • Adina Weinberger
  • Eran Segal
  • First Published January 8, 2019
Corrigendum

Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

  • David van Dijk
  • Eilon Sharon
  • Maya Lotan-Pompan
  • Adina Weinberger
  • Eran Segal
  • Lucas B. Carey
  • First Published March 1, 2017
Research

Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

  • David van Dijk
  • Eilon Sharon
  • Maya Lotan-Pompan
  • Adina Weinberger
  • Eran Segal
  • Lucas B. Carey
  • First Published December 13, 2016
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