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Method

Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC

Byron J. Smith
Chunyu Zhao
Veronika Dubinkina
Xiaofan Jin
Liron Zahavi
Saar Shoer
Jacqueline Moltzau-Anderson
Eran Segal
Katherine S. Pollard

First Published April 10, 2025

Research

Dynamics of broad H3K4me3 domains uncover an epigenetic switch between cell identity and cancer-related genes

Mohamed Belhocine
Mathieu Simonin
José David Abad Flores
Agata Cieslak
Iris Manosalva
Lydie Pradel Charlotte Smith Eve-Lyne Mathieu Guillaume Charbonnier Joost H.A. Martens Hendrik G. Stunnenberg Muhammad Ahmad Maqbool Aneta Mikulasova Lisa J. Russell Daniel Rico
... [+10 authors] ...,
Denis Puthier
Pierre Ferrier
Vahid Asnafi
Salvatore Spicuglia

First Published June 23, 2021

Method

A plug and play microfluidic platform for standardized sensitive low-input chromatin immunoprecipitation

René A.M. Dirks
Peter C. Thomas
Haoyu Wu
Robert C. Jones
Hendrik G. Stunnenberg
Hendrik Marks

First Published March 11, 2021

Research

Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma

Raquel Ordoñez
Marta Kulis
Nuria Russiñol
Vicente Chapaprieta
Arantxa Carrasco-Leon
Beatriz García-Torre Stella Charalampopoulou Guillem Clot Renée Beekman Cem Meydan Martí Duran-Ferrer Núria Verdaguer-Dot Roser Vilarrasa-Blasi Paula Soler-Vila Leire Garate Estíbaliz Miranda Edurne San José-Enériz Juan R. Rodriguez-Madoz Teresa Ezponda Rebeca Martínez-Turrilas Amaia Vilas-Zornoza David Lara-Astiaso Daphné Dupéré-Richer Joost H.A. Martens Halima El-Omri Ruba Y. Taha Maria J. Calasanz Bruno Paiva Jesus San Miguel Paul Flicek Ivo Gut Ari Melnick Constantine S. Mitsiades Jonathan D. Licht Elias Campo
... [+30 authors] ...,
Hendrik G. Stunnenberg
Xabier Agirre
Felipe Prosper
Jose I. Martin-Subero

First Published August 20, 2020

Research

Sequence determinants of polyadenylation-mediated regulation

Ilya Vainberg Slutskin
Adina Weinberger
Eran Segal

First Published September 17, 2019

Research

The circular RNome of primary breast cancer

Marcel Smid
Saskia M. Wilting
Katharina Uhr
F. Germán Rodríguez-González
Vanja de Weerd
Wendy J.C. Prager-Van der Smissen Michelle van der Vlugt-Daane Anne van Galen Serena Nik-Zainal Adam Butler Sancha Martin Helen R. Davies Johan Staaf Marc J. van de Vijver Andrea L. Richardson Gaëten MacGrogan Roberto Salgado Gert G.G.M. van den Eynden Colin A. Purdie Alastair M. Thompson Carlos Caldas Paul N. Span Fred C.G.J. Sweep Peter T. Simpson Sunil R. Lakhani Steven Van Laere Christine Desmedt Angelo Paradiso Jorunn Eyfjord Annegien Broeks Anne Vincent-Salomon Andrew P. Futreal Stian Knappskog Tari King Alain Viari Anne-Lise Børresen-Dale Hendrik G. Stunnenberg
... [+32 authors] ...,
Mike Stratton
John A. Foekens
Anieta M. Sieuwerts
John W.M. Martens

First Published January 28, 2019

Research

Systematic interrogation of human promoters

Shira Weingarten-Gabbay
Ronit Nir
Shai Lubliner
Eilon Sharon
Yael Kalma
Adina Weinberger
Eran Segal

First Published January 8, 2019

Corrigendum

Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

David van Dijk
Eilon Sharon
Maya Lotan-Pompan
Adina Weinberger
Eran Segal
Lucas B. Carey

First Published March 1, 2017

Research

Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

David van Dijk
Eilon Sharon
Maya Lotan-Pompan
Adina Weinberger
Eran Segal
Lucas B. Carey

First Published December 13, 2016

Research

Noise in gene expression is coupled to growth rate

Leeat Keren
David van Dijk
Shira Weingarten-Gabbay
Dan Davidi
Ghil Jona
Adina Weinberger
Ron Milo
Eran Segal

First Published September 9, 2015

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