Method
Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC
- First Published April 10, 2025
Research
Sequence determinants of polyadenylation-mediated regulation
- First Published September 17, 2019
Research
Replication timing networks reveal a link between transcription regulatory circuits and replication timing control
- First Published August 21, 2019
Corrigendum
Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators
- First Published March 1, 2017
Research
Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators
- First Published December 13, 2016
Corrigendum
Corrigendum: Unraveling determinants of transcription factor binding outside the core binding site
- First Published September 1, 2015
Research
Comprehensive identification and analysis of human accelerated regulatory DNA
- First Published June 23, 2015
Research
Core promoter sequence in yeast is a major determinant of expression level
- First Published May 12, 2015
Method
Unraveling determinants of transcription factor binding outside the core binding site
- First Published March 11, 2015
Method
Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression
- First Published February 12, 2015
Research
Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters
- First Published October 7, 2014
Method
Probing the effect of promoters on noise in gene expression using thousands of designed sequences
- First Published July 16, 2014
Research
P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression" > Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
- First Published March 26, 2014
Method
Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
- First Published February 5, 2014
Resource
Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach
- First Published August 15, 2013
Research
Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise
- First Published February 12, 2013
Research
Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters
- First Published October 18, 2011
Research
C. elegans" > High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans
- First Published December 22, 2010
Research
p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy
- First Published August 17, 2010
Methods
Incorporating nucleosomes into thermodynamic models of transcription regulation
- First Published May 18, 2009
Methods
cis-regulatory motifs in human core promoters" > Systematic functional characterization of cis-regulatory motifs in human core promoters
- First Published February 6, 2008