Resource
Charting the regulatory landscape of TP53 on transposable elements in cancer
- First Published May 13, 2025
Resource
Exploring the epigenome profiles of repetitive elements with the WashU Repeat Browser
- First Published February 21, 2025
Resource
Common and specific gene regulatory programs in zebrafish caudal fin regeneration at single-cell resolution
- First Published January 14, 2025
Method
Using long-read CAGE sequencing to profile cryptic-promoter-derived transcripts and their contribution to the immunopeptidome
- First Published December 8, 2023
Research
Gaps and complex structurally variant loci in phased genome assemblies
- First Published May 10, 2023
Resource
Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser
- First Published May 8, 2023
Research
Functional characterization of enhancer activity during a long terminal repeat's evolution
- First Published October 3, 2022
Resource
cis-regulatory elements, tissue-specific expression, and alternative promoters in zebrafish" > Epigenomic analysis reveals prevalent contribution of transposable elements to cis-regulatory elements, tissue-specific expression, and alternative promoters in zebrafish
- First Published June 1, 2022
Method
Transcript assembly improves expression quantification of transposable elements in single-cell RNA-seq data
- First Published December 21, 2020
Method
Epigenomic differences in the human and chimpanzee genomes are associated with structural variation
- First Published December 10, 2020
Method
Guide Positioning Sequencing identifies aberrant DNA methylation patterns that alter cell identity and tumor-immune surveillance networks
- First Published January 22, 2019
Resource
A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree
- First Published November 30, 2016
Research
Widespread contribution of transposable elements to the innovation of gene regulatory networks
- First Published October 15, 2014
Research
Recurrent epimutations activate gene body promoters in primary glioblastoma
- First Published April 7, 2014
Method
Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm
- First Published June 26, 2013
Method
Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods
- First Published June 26, 2013
Method
Spatiotemporal clustering of the epigenome reveals rules of dynamic gene regulation
- First Published October 2, 2012
Method
Spark: A navigational paradigm for genomic data exploration
- First Published September 7, 2012
Research
Genome-wide DNA methylation profiles in hematopoietic stem and progenitor cells reveal overrepresentation of ETS transcription factor binding sites
- First Published June 8, 2012
Method
Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing
- First Published September 1, 2010
Methods
A new strategy for genome assembly using short sequence reads and reduced representation libraries
- First Published February 1, 2010
ARTICLE
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
Methods
Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)
- First Published December 12, 2005
ARTICLE
Identification and Characterization of Multi-Species Conserved Sequences
- First Published December 1, 2003
LETTER
A Comparative Molecular Analysis of Developing Mouse Forelimbs and Hindlimbs Using Serial Analysis of Gene Expression (SAGE)
- First Published September 20, 2001