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cis-antisense RNA duplexes" > A transcriptome-wide systematic search does not detect A-to-I RNA editing in cis-antisense RNA duplexes

Zohar Rosenwasser
Roni Cohen-Fultheim
Ofir Shliefer
Erez Y. Levanon
Eli Eisenberg

First Published March 12, 2026

Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs

Michiel de Hoon
Alessandro Bonetti
Charles Plessy
Yoshinari Ando
Chung-Chau Hon
Yuri Ishizu Masayoshi Itoh Sachi Kato Dongyan Lin Sho Maekawa Mitsuyoshi Murata Hiromi Nishiyori Jay W. Shin Jens Stolte Ana Maria Suzuki Michihira Tagami Hazuki Takahashi Supat Thongjuea
... [+13 authors] ...,
Alistair R.R. Forrest
Yoshihide Hayashizaki
Juha Kere
Piero Carninci

First Published August 12, 2022

Global quantification exposes abundant low-level off-target activity by base editors

Ilana Buchumenski
Shalom Hillel Roth
Eli Kopel
Efrat Katsman
Ariel Feiglin
Erez Y. Levanon
Eli Eisenberg

First Published October 19, 2021

Comparative transcriptomics of primary cells in vertebrates

Tanvir Alam
Saumya Agrawal
Jessica Severin
Robert S. Young
Robin Andersson
Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
... [+16 authors] ...,
Levon M. Khachigian
Yoshihide Hayashizaki
Piero Carninci
Michiel J.L. de Hoon

First Published July 27, 2020

The frequent evolutionary birth and death of functional promoters in mouse and human

Robert S. Young
Yoshihide Hayashizaki
Robin Andersson
Albin Sandelin
Hideya Kawaji
Masayoshi Itoh Timo Lassmann
... [+2 authors] ...,
Piero Carninci
Wendy A. Bickmore
Alistair R. Forrest
Martin S. Taylor

First Published July 30, 2015

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

Hideya Kawaji
Marina Lizio
Masayoshi Itoh
Mutsumi Kanamori-Katayama
Ai Kaiho
Hiromi Nishiyori-Sueki Jay W. Shin Miki Kojima-Ishiyama Mitsuoki Kawano Mitsuyoshi Murata Noriko Ninomiya-Fukuda Sachi Ishikawa-Kato Sayaka Nagao-Sato
... [+8 authors] ...,
Shohei Noma
Yoshihide Hayashizaki
Alistair R.R. Forrest
Piero Carninci

First Published March 27, 2014

A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes

Lily Bazak
Ami Haviv
Michal Barak
Jasmine Jacob-Hirsch
Patricia Deng
Rui Zhang Farren J. Isaacs
... [+2 authors] ...,
Gideon Rechavi
Jin Billy Li
Eli Eisenberg
Erez Y. Levanon

First Published December 17, 2013

Systematic identification of edited microRNAs in the human brain

Shahar Alon
Eyal Mor
Francois Vigneault
George M. Church
Franco Locatelli
Federica Galeano
Angela Gallo
Noam Shomron
Eli Eisenberg

First Published April 12, 2012

Promoter architecture of mouse olfactory receptor genes

Charles Plessy
Giovanni Pascarella
Nicolas Bertin
Altuna Akalin
Claudia Carrieri
Anne Vassalli Dejan Lazarevic Jessica Severin Christina Vlachouli Roberto Simone Geoffrey J. Faulkner Jun Kawai Carsten O. Daub Silvia Zucchelli Yoshihide Hayashizaki
... [+10 authors] ...,
Peter Mombaerts
Boris Lenhard
Stefano Gustincich
Piero Carninci

First Published December 22, 2011

Barcoding bias in high-throughput multiplex sequencing of miRNA

Shahar Alon
Francois Vigneault
Seda Eminaga
Danos C. Christodoulou
Jonathan G. Seidman
George M. Church
Eli Eisenberg

First Published July 12, 2011

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