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Research

Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma

David H. Gutmann
Michael D. McLellan
Ibrahim Hussain
John W. Wallis
Lucinda L. Fulton
Robert S. Fulton Vincent Magrini Ryan Demeter Todd Wylie Cyriac Kandoth Jeffrey R. Leonard
... [+6 authors] ...,
Abhijit Guha
Christopher A. Miller
Li Ding
Elaine R. Mardis

First Published December 5, 2012

Resource

MuSiC: Identifying mutational significance in cancer genomes

Nathan D. Dees
Qunyuan Zhang
Cyriac Kandoth
Michael C. Wendl
William Schierding
Daniel C. Koboldt Thomas B. Mooney Matthew B. Callaway
... [+3 authors] ...,
David Dooling
Elaine R. Mardis
Richard K. Wilson
Li Ding

First Published July 3, 2012

Resource

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

Daniel C. Koboldt
Qunyuan Zhang
David E. Larson
Dong Shen
Michael D. McLellan
Ling Lin
... [+1 authors] ...,
Christopher A. Miller
Elaine R. Mardis
Li Ding
Richard K. Wilson

First Published February 2, 2012

Method

Biome representational in silico karyotyping

Valliammai Muthappan
Aaron Y. Lee
Tamara L. Lamprecht
Lakshmi Akileswaran
Suzanne M. Dintzis
Choli Lee
... [+1 authors] ...,
Vincent Magrini
Elaine R. Mardis
Jay Shendure
Russell N. Van Gelder

First Published February 10, 2011

Method

Next-generation sequencing identifies the natural killer cell microRNA transcriptome

Todd A. Fehniger
Todd Wylie
Elizabeth Germino
Jeffrey W. Leong
Vincent J. Magrini
Sunita Koul Catherine R. Keppel Stephanie E. Schneider Daniel C. Koboldt Ryan P. Sullivan Michael E. Heinz Seth D. Crosby Rakesh Nagarajan
... [+8 authors] ...,
Giridharan Ramsingh
Daniel C. Link
Timothy J. Ley
Elaine R. Mardis

First Published October 8, 2010

LETTER

Sequencing human–gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites

Santhosh Girirajan
Lin Chen
Tina Graves
Tomas Marques-Bonet
Mario Ventura
Catrina Fronick Lucinda Fulton Mariano Rocchi
... [+3 authors] ...,
Robert S. Fulton
Richard K. Wilson
Elaine R. Mardis
Evan E. Eichler

First Published November 24, 2008

LETTER

Pinus contorta and Oryza sativa" > Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

Ryan D. Morin
Gozde Aksay
Elena Dolgosheina
H. Alexander Ebhardt
Vincent Magrini
Elaine R. Mardis
S. Cenk Sahinalp
Peter J. Unrau

First Published March 6, 2008

ARTICLE

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

Elliott H. Margulies
Gregory M. Cooper
George Asimenos
Daryl J. Thomas
Colin N. Dewey
Adam Siepel Ewan Birney Damian Keefe Ariel S. Schwartz Minmei Hou James Taylor Sergey Nikolaev Juan I. Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham James B. Brown Peter Bickel Ian Holmes James C. Mullikin Abel Ureta-Vidal Benedict Paten Eric A. Stone Kate R. Rosenbloom W. James Kent Gerard G. Bouffard Xiaobin Guan Nancy F. Hansen Jacquelyn R. Idol Valerie V.B. Maduro Baishali Maskeri Jennifer C. McDowell Morgan Park Pamela J. Thomas Alice C. Young Robert W. Blakesley Donna M. Muzny Erica Sodergren David A. Wheeler Kim C. Worley Huaiyang Jiang George M. Weinstock Richard A. Gibbs Tina Graves Robert Fulton Elaine R. Mardis Richard K. Wilson Michele Clamp James Cuff Sante Gnerre David B. Jaffe Jean L. Chang Kerstin Lindblad-Toh Eric S. Lander Angie Hinrichs Heather Trumbower Hiram Clawson Ann Zweig Robert M. Kuhn Galt Barber Rachel Harte Donna Karolchik Matthew A. Field Richard A. Moore Carrie A. Matthewson Jacqueline E. Schein Marco A. Marra Stylianos E. Antonarakis Serafim Batzoglou Nick Goldman Ross Hardison David Haussler
... [+68 authors] ...,
Webb Miller
Lior Pachter
Eric D. Green
Arend Sidow

First Published June 13, 2007

RESOURCE

PolyScan: An automatic indel and SNP detection approach to the analysis of human resequencing data

Ken Chen
Michael D. McLellan
Li Ding
Michael C. Wendl
Yumi Kasai
Richard K. Wilson
Elaine R. Mardis

First Published April 6, 2007

RESOURCE

Molecular refinement of gibbon genome rearrangements

Roberta Roberto
Oronzo Capozzi
Richard K. Wilson
Elaine R. Mardis
Mariana Lomiento
Eray Tuzun Ze Cheng
... [+2 authors] ...,
Alan R. Mootnick
Nicoletta Archidiacono
Mariano Rocchi
Evan E. Eichler

First Published December 21, 2006

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