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Perspective

Ribosome decision graphs for the representation of eukaryotic RNA translation complexity

  • Jack A.S. Tierney
  • Michał Świrski
  • Håkon Tjeldnes
  • Jonathan M. Mudge
  • Joanna Kufel
  • Nicola Whiffin
  • Eivind Valen
  • Pavel V. Baranov
  • First Published May 7, 2024
Method

Accurate analysis of genuine CRISPR editing events with ampliCan

  • Kornel Labun
  • Xiaoge Guo
  • Alejandro Chavez
  • George Church
  • James A. Gagnon
  • Eivind Valen
  • First Published March 8, 2019
Method

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

  • Jakob Skou Pedersen
  • Eivind Valen
  • Amhed M. Vargas Velazquez
  • Brian J. Parker
  • Morten Rasmussen
  • Stinus Lindgreen Berit Lilje Desmond J. Tobin Theresa K. Kelly Søren Vang Robin Andersson Peter A. Jones Cindi A. Hoover Alexei Tikhonov Egor Prokhortchouk Edward M. Rubin Albin Sandelin
  • ... [+12 authors] ...,
  • M. Thomas P. Gilbert
  • Anders Krogh
  • Eske Willerslev
  • Ludovic Orlando
  • First Published December 3, 2013
Perspective

Translating cancer ‘omics’ to improved outcomes

  • Emily A. Vucic
  • Kelsie L. Thu
  • Keith Robison
  • Leszek A. Rybaczyk
  • Raj Chari
  • Carlos E. Alvarez
  • Wan L. Lam
  • First Published February 1, 2012
Resource

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

  • Andrea Pauli
  • Eivind Valen
  • Michael F. Lin
  • Manuel Garber
  • Nadine L. Vastenhouw
  • Joshua Z. Levin Lin Fan
  • ... [+2 authors] ...,
  • Albin Sandelin
  • John L. Rinn
  • Aviv Regev
  • Alexander F. Schier
  • First Published November 22, 2011
Resource

The completion of the Mammalian Gene Collection (MGC)

  • Gary Temple
  • Daniela S. Gerhard
  • Rebekah Rasooly
  • Elise A. Feingold
  • Peter J. Good
  • Cristen Robinson Allison Mandich Jeffrey G. Derge Jeanne Lewis Debonny Shoaf Francis S. Collins Wonhee Jang Lukas Wagner Carolyn M. Shenmen Leonie Misquitta Carl F. Schaefer Kenneth H. Buetow Tom I. Bonner Linda Yankie Ming Ward Lon Phan Alex Astashyn Garth Brown Catherine Farrell Jennifer Hart Melissa Landrum Bonnie L. Maidak Michael Murphy Terence Murphy Bhanu Rajput Lillian Riddick David Webb Janet Weber Wendy Wu Kim D. Pruitt Donna Maglott Adam Siepel Brona Brejova Mark Diekhans Rachel Harte Robert Baertsch Jim Kent David Haussler Michael Brent Laura Langton Charles L.G. Comstock Michael Stevens Chaochun Wei Marijke J. van Baren Kourosh Salehi-Ashtiani Ryan R. Murray Lila Ghamsari Elizabeth Mello Chenwei Lin Christa Pennacchio Kirsten Schreiber Nicole Shapiro Amber Marsh Elizabeth Pardes Troy Moore Anita Lebeau Mike Muratet Blake Simmons David Kloske Stephanie Sieja James Hudson Praveen Sethupathy Michael Brownstein Narayan Bhat Joseph Lazar Howard Jacob Chris E. Gruber Mark R. Smith John McPherson Angela M. Garcia Preethi H. Gunaratne Jiaqian Wu Donna Muzny Richard A. Gibbs Alice C. Young Gerard G. Bouffard Robert W. Blakesley Jim Mullikin Eric D. Green Mark C. Dickson Alex C. Rodriguez Jane Grimwood Jeremy Schmutz Richard M. Myers Martin Hirst Thomas Zeng Kane Tse Michelle Moksa Merinda Deng Kevin Ma Diana Mah Johnson Pang Greg Taylor Eric Chuah Athena Deng Keith Fichter Anne Go Stephanie Lee Jing Wang Malachi Griffith Ryan Morin Richard A. Moore Michael Mayo Sarah Munro Susan Wagner Steven J.M. Jones Robert A. Holt Marco A. Marra Sun Lu Shuwei Yang James Hartigan Marcus Graf Ralf Wagner Stanley Letovksy Jacqueline C. Pulido Keith Robison Dominic Esposito James Hartley
  • ... [+118 authors] ...,
  • Vanessa E. Wall
  • Ralph F. Hopkins
  • Osamu Ohara
  • Stefan Wiemann
  • First Published September 18, 2009
Methods

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE

  • Eivind Valen
  • Giovanni Pascarella
  • Alistair Chalk
  • Norihiro Maeda
  • Miki Kojima
  • Chika Kawazu Mitsuyoshi Murata Hiromi Nishiyori Dejan Lazarevic Dario Motti Troels Torben Marstrand Man-Hung Eric Tang Xiaobei Zhao Anders Krogh Ole Winther Takahiro Arakawa Jun Kawai Christine Wells Carsten Daub Matthias Harbers
  • ... [+15 authors] ...,
  • Yoshihide Hayashizaki
  • Stefano Gustincich
  • Albin Sandelin
  • Piero Carninci
  • First Published December 11, 2008
ARTICLE

A code for transcription initiation in mammalian genomes

  • Martin C. Frith
  • Eivind Valen
  • Anders Krogh
  • Yoshihide Hayashizaki
  • Piero Carninci
  • Albin Sandelin
  • First Published November 21, 2007
RESEARCH

Mycobacterium leprae Genome" > Multiplex Sequencing of 1.5 Mb of the Mycobacterium leprae Genome

  • Douglas R. Smith
  • Peter Richterich
  • Marc Rubenfield
  • Philip W. Rice
  • Carol Butler
  • Hong-Mei Lee Susan Kirst Kristin Gundersen Kari Abendschan Qinxue Xu Maria Chung Craig Deloughery Tyler Aldredge James Maher Ronald Lundstrom Craig Tulig Kathleen Falls Joan Imrich Dana Torrey Marcy Engelstein Gary Breton Deepika Madan Raymond Nietupski Bruce Seitz Steven Connelly Steven McDougall Hershel Safer Rene Gibson Lynn Doucette-Stamm Karin Eiglmeier Staffan Bergh Stewart T. Cole Keith Robison
  • ... [+28 authors] ...,
  • Laura Richterich
  • Jason Johnson
  • George M. Church
  • Jen-i Mao
  • First Published August 1, 1997
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