Search | Genome Research

Your search for returned 17 results

Method

CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing

Kaiyuan Zhu
Matthew G. Jones
Jens Luebeck
Xinxin Bu
Hyerim Yi
King L. Hung Ivy Tsz-Lo Wong
... [+2 authors] ...,
Shu Zhang
Paul S. Mischel
Howard Y. Chang
Vineet Bafna

First Published July 9, 2024

Research

Deficiency of nucleotide excision repair is associated with mutational signature observed in cancer

Myrthe Jager
Francis Blokzijl
Ewart Kuijk
Johanna Bertl
Maria Vougioukalaki
Roel Janssen Nicolle Besselink Sander Boymans Joep de Ligt Jakob Skou Pedersen
... [+5 authors] ...,
Jan Hoeijmakers
Joris Pothof
Ruben van Boxtel
Edwin Cuppen

First Published June 20, 2019

Research

Characteristics of de novo structural changes in the human genome

Wigard P. Kloosterman
Laurent C. Francioli
Fereydoun Hormozdiari
Tobias Marschall
Jayne Y. Hehir-Kwa
Abdel Abdellaoui Eric-Wubbo Lameijer Matthijs H. Moed Vyacheslav Koval Ivo Renkens Markus J. van Roosmalen Pascal Arp Lennart C. Karssen Bradley P. Coe Robert E. Handsaker Eka D. Suchiman Edwin Cuppen Djie Tjwan Thung Mitch McVey Michael C. Wendl André Uitterlinden Cornelia M. van Duijn Morris A. Swertz Cisca Wijmenga GertJan B. van Ommen P. Eline Slagboom Dorret I. Boomsma Alexander Schönhuth Evan E. Eichler Paul I.W. de Bakker Kai Ye Victor Guryev André Uitterlinden Cornelia M. van Duijn Morris A. Swertz Cisca Wijmenga GertJan B. van Ommen P. Eline Slagboom Dorret I. Boomsma Alexander Schönhuth
... [+35 authors] ...,
Evan E. Eichler
Paul I.W. de Bakker
Kai Ye
Victor Guryev

First Published April 16, 2015

Research

Natural variation of histone modification and its impact on gene expression in the rat genome

Carola Rintisch
Matthias Heinig
Anja Bauerfeind
Sebastian Schafer
Christin Mieth
Giannino Patone Oliver Hummel Wei Chen Stuart Cook Edwin Cuppen Maria Colomé-Tatché Frank Johannes Ritsert C. Jansen Helen Neil
... [+9 authors] ...,
Michel Werner
Michal Pravenec
Martin Vingron
Norbert Hubner

First Published May 2, 2014

Research

Genomic and transcriptomic plasticity in treatment-naïve ovarian cancer

Marlous Hoogstraat
Mirjam S. de Pagter
Geert A. Cirkel
Markus J. van Roosmalen
Timothy T. Harkins
Karen Duran Jennifer Kreeftmeijer Ivo Renkens Petronella O. Witteveen Clarence C. Lee Isaac J. Nijman Tanisha Guy Ruben van ’t Slot Trudy N. Jonges Martijn P. Lolkema Marco J. Koudijs
... [+11 authors] ...,
Ronald P. Zweemer
Emile E. Voest
Edwin Cuppen
Wigard P. Kloosterman

First Published November 12, 2013

Method

SeqFold: Genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data

Zhengqing Ouyang
Michael P. Snyder
Howard Y. Chang

First Published October 11, 2012

Method

High-throughput semiquantitative analysis of insertional mutations in heterogeneous tumors

Marco J. Koudijs
Christiaan Klijn
Louise van der Weyden
Jaap Kool
Jelle ten Hoeve
Daoud Sie Pramudita R. Prasetyanti Eva Schut Sjors Kas Theodore Whipp
... [+5 authors] ...,
Edwin Cuppen
Lodewyk Wessels
David J. Adams
Jos Jonkers

First Published August 18, 2011

Research

The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance

Santosh S. Atanur
İnanç Birol
Victor Guryev
Martin Hirst
Oliver Hummel
Catherine Morrissey Jacques Behmoaras Xose M. Fernandez-Suarez Michelle D. Johnson William M. McLaren Giannino Patone Enrico Petretto Charles Plessy Kathleen S. Rockland Charles Rockland Kathrin Saar Yongjun Zhao Piero Carninci Paul Flicek Ted Kurtz Edwin Cuppen Michal Pravenec
... [+17 authors] ...,
Norbert Hubner
Steven J.M. Jones
Ewan Birney
Timothy J. Aitman

First Published April 29, 2010

Letter

Repertoire and evolution of miRNA genes in four divergent nematode species

Elzo de Wit
Sam E.V. Linsen
Edwin Cuppen
Eugene Berezikov

First Published September 15, 2009

Methods

Systematic functional characterization of cis-regulatory motifs in human core promoters

Saurabh Sinha
Adam S. Adler
Yair Field
Howard Y. Chang
Eran Segal

First Published February 6, 2008

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