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Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs

  • Michiel de Hoon
  • Alessandro Bonetti
  • Charles Plessy
  • Yoshinari Ando
  • Chung-Chau Hon
  • Yuri Ishizu Masayoshi Itoh Sachi Kato Dongyan Lin Sho Maekawa Mitsuyoshi Murata Hiromi Nishiyori Jay W. Shin Jens Stolte Ana Maria Suzuki Michihira Tagami Hazuki Takahashi Supat Thongjuea
  • ... [+13 authors] ...,
  • Alistair R.R. Forrest
  • Yoshihide Hayashizaki
  • Juha Kere
  • Piero Carninci
  • First Published August 12, 2022

Inferring genes that escape X-Chromosome inactivation reveals important contribution of variable escape genes to sex-biased diseases

  • Renan Sauteraud
  • Jill M. Stahl
  • Jesica James
  • Marisa Englebright
  • Fang Chen
  • Xiaowei Zhan
  • Laura Carrel
  • Dajiang J. Liu
  • First Published August 23, 2021

Comparative transcriptomics of primary cells in vertebrates

  • Tanvir Alam
  • Saumya Agrawal
  • Jessica Severin
  • Robert S. Young
  • Robin Andersson
  • Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
  • ... [+16 authors] ...,
  • Levon M. Khachigian
  • Yoshihide Hayashizaki
  • Piero Carninci
  • Michiel J.L. de Hoon
  • First Published July 27, 2020

Deficiency of nucleotide excision repair is associated with mutational signature observed in cancer

  • Myrthe Jager
  • Francis Blokzijl
  • Ewart Kuijk
  • Johanna Bertl
  • Maria Vougioukalaki
  • Roel Janssen Nicolle Besselink Sander Boymans Joep de Ligt Jakob Skou Pedersen
  • ... [+5 authors] ...,
  • Jan Hoeijmakers
  • Joris Pothof
  • Ruben van Boxtel
  • Edwin Cuppen
  • First Published June 20, 2019

The frequent evolutionary birth and death of functional promoters in mouse and human

  • Robert S. Young
  • Yoshihide Hayashizaki
  • Robin Andersson
  • Albin Sandelin
  • Hideya Kawaji
  • Masayoshi Itoh Timo Lassmann
  • ... [+2 authors] ...,
  • Piero Carninci
  • Wendy A. Bickmore
  • Alistair R. Forrest
  • Martin S. Taylor
  • First Published July 30, 2015

Characteristics of de novo structural changes in the human genome

  • Wigard P. Kloosterman
  • Laurent C. Francioli
  • Fereydoun Hormozdiari
  • Tobias Marschall
  • Jayne Y. Hehir-Kwa
  • Abdel Abdellaoui Eric-Wubbo Lameijer Matthijs H. Moed Vyacheslav Koval Ivo Renkens Markus J. van Roosmalen Pascal Arp Lennart C. Karssen Bradley P. Coe Robert E. Handsaker Eka D. Suchiman Edwin Cuppen Djie Tjwan Thung Mitch McVey Michael C. Wendl André Uitterlinden Cornelia M. van Duijn Morris A. Swertz Cisca Wijmenga GertJan B. van Ommen P. Eline Slagboom Dorret I. Boomsma Alexander Schönhuth Evan E. Eichler Paul I.W. de Bakker Kai Ye Victor Guryev André Uitterlinden Cornelia M. van Duijn Morris A. Swertz Cisca Wijmenga GertJan B. van Ommen P. Eline Slagboom Dorret I. Boomsma Alexander Schönhuth
  • ... [+35 authors] ...,
  • Evan E. Eichler
  • Paul I.W. de Bakker
  • Kai Ye
  • Victor Guryev
  • First Published April 16, 2015

Natural variation of histone modification and its impact on gene expression in the rat genome

  • Carola Rintisch
  • Matthias Heinig
  • Anja Bauerfeind
  • Sebastian Schafer
  • Christin Mieth
  • Giannino Patone Oliver Hummel Wei Chen Stuart Cook Edwin Cuppen Maria Colomé-Tatché Frank Johannes Ritsert C. Jansen Helen Neil
  • ... [+9 authors] ...,
  • Michel Werner
  • Michal Pravenec
  • Martin Vingron
  • Norbert Hubner
  • First Published May 2, 2014

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

  • Hideya Kawaji
  • Marina Lizio
  • Masayoshi Itoh
  • Mutsumi Kanamori-Katayama
  • Ai Kaiho
  • Hiromi Nishiyori-Sueki Jay W. Shin Miki Kojima-Ishiyama Mitsuoki Kawano Mitsuyoshi Murata Noriko Ninomiya-Fukuda Sachi Ishikawa-Kato Sayaka Nagao-Sato
  • ... [+8 authors] ...,
  • Shohei Noma
  • Yoshihide Hayashizaki
  • Alistair R.R. Forrest
  • Piero Carninci
  • First Published March 27, 2014

Genomic and transcriptomic plasticity in treatment-naïve ovarian cancer

  • Marlous Hoogstraat
  • Mirjam S. de Pagter
  • Geert A. Cirkel
  • Markus J. van Roosmalen
  • Timothy T. Harkins
  • Karen Duran Jennifer Kreeftmeijer Ivo Renkens Petronella O. Witteveen Clarence C. Lee Isaac J. Nijman Tanisha Guy Ruben van ’t Slot Trudy N. Jonges Martijn P. Lolkema Marco J. Koudijs
  • ... [+11 authors] ...,
  • Ronald P. Zweemer
  • Emile E. Voest
  • Edwin Cuppen
  • Wigard P. Kloosterman
  • First Published November 12, 2013

Promoter architecture of mouse olfactory receptor genes

  • Charles Plessy
  • Giovanni Pascarella
  • Nicolas Bertin
  • Altuna Akalin
  • Claudia Carrieri
  • Anne Vassalli Dejan Lazarevic Jessica Severin Christina Vlachouli Roberto Simone Geoffrey J. Faulkner Jun Kawai Carsten O. Daub Silvia Zucchelli Yoshihide Hayashizaki
  • ... [+10 authors] ...,
  • Peter Mombaerts
  • Boris Lenhard
  • Stefano Gustincich
  • Piero Carninci
  • First Published December 22, 2011
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