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Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs

Michiel de Hoon
Alessandro Bonetti
Charles Plessy
Yoshinari Ando
Chung-Chau Hon
Yuri Ishizu Masayoshi Itoh Sachi Kato Dongyan Lin Sho Maekawa Mitsuyoshi Murata Hiromi Nishiyori Jay W. Shin Jens Stolte Ana Maria Suzuki Michihira Tagami Hazuki Takahashi Supat Thongjuea
... [+13 authors] ...,
Alistair R.R. Forrest
Yoshihide Hayashizaki
Juha Kere
Piero Carninci

First Published August 12, 2022

Comparative transcriptomics of primary cells in vertebrates

Tanvir Alam
Saumya Agrawal
Jessica Severin
Robert S. Young
Robin Andersson
Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
... [+16 authors] ...,
Levon M. Khachigian
Yoshihide Hayashizaki
Piero Carninci
Michiel J.L. de Hoon

First Published July 27, 2020

The frequent evolutionary birth and death of functional promoters in mouse and human

Robert S. Young
Yoshihide Hayashizaki
Robin Andersson
Albin Sandelin
Hideya Kawaji
Masayoshi Itoh Timo Lassmann
... [+2 authors] ...,
Piero Carninci
Wendy A. Bickmore
Alistair R. Forrest
Martin S. Taylor

First Published July 30, 2015

Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome

Weibing Shi
Christina D. Moon
Sinead C. Leahy
Dongwan Kang
Jeff Froula
Sandra Kittelmann Christina Fan Samuel Deutsch Dragana Gagic Henning Seedorf William J. Kelly Renee Atua Carrie Sang Priya Soni Dong Li Cesar S. Pinares-Patiño John C. McEwan Peter H. Janssen Feng Chen
... [+14 authors] ...,
Axel Visel
Zhong Wang
Graeme T. Attwood
Edward M. Rubin

First Published June 6, 2014

Tissue-specific SMARCA4 binding at active and repressed regulatory elements during embryogenesis

Catia Attanasio
Alex S. Nord
Yiwen Zhu
Matthew J. Blow
Simon C. Biddie
Eric M. Mendenhall Jesse Dixon Crystal Wright Roya Hosseini Jennifer A. Akiyama Amy Holt Ingrid Plajzer-Frick Malak Shoukry Veena Afzal Bing Ren
... [+10 authors] ...,
Bradley E. Bernstein
Edward M. Rubin
Axel Visel
Len A. Pennacchio

First Published April 21, 2014

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

Hideya Kawaji
Marina Lizio
Masayoshi Itoh
Mutsumi Kanamori-Katayama
Ai Kaiho
Hiromi Nishiyori-Sueki Jay W. Shin Miki Kojima-Ishiyama Mitsuoki Kawano Mitsuyoshi Murata Noriko Ninomiya-Fukuda Sachi Ishikawa-Kato Sayaka Nagao-Sato
... [+8 authors] ...,
Shohei Noma
Yoshihide Hayashizaki
Alistair R.R. Forrest
Piero Carninci

First Published March 27, 2014

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

Jakob Skou Pedersen
Eivind Valen
Amhed M. Vargas Velazquez
Brian J. Parker
Morten Rasmussen
Stinus Lindgreen Berit Lilje Desmond J. Tobin Theresa K. Kelly Søren Vang Robin Andersson Peter A. Jones Cindi A. Hoover Alexei Tikhonov Egor Prokhortchouk Edward M. Rubin Albin Sandelin
... [+12 authors] ...,
M. Thomas P. Gilbert
Anders Krogh
Eske Willerslev
Ludovic Orlando

First Published December 3, 2013

A vast collection of microbial genes that are toxic to bacteria

Aya Kimelman
Asaf Levy
Hila Sberro
Shahar Kidron
Azita Leavitt
Gil Amitai Deborah R. Yoder-Himes
... [+2 authors] ...,
Omri Wurtzel
Yiwen Zhu
Edward M. Rubin
Rotem Sorek

First Published February 1, 2012

Promoter architecture of mouse olfactory receptor genes

Charles Plessy
Giovanni Pascarella
Nicolas Bertin
Altuna Akalin
Claudia Carrieri
Anne Vassalli Dejan Lazarevic Jessica Severin Christina Vlachouli Roberto Simone Geoffrey J. Faulkner Jun Kawai Carsten O. Daub Silvia Zucchelli Yoshihide Hayashizaki
... [+10 authors] ...,
Peter Mombaerts
Boris Lenhard
Stefano Gustincich
Piero Carninci

First Published December 22, 2011

Unamplified cap analysis of gene expression on a single-molecule sequencer

Mutsumi Kanamori-Katayama
Masayoshi Itoh
Hideya Kawaji
Timo Lassmann
Shintaro Katayama
Miki Kojima Nicolas Bertin Ai Kaiho Noriko Ninomiya
... [+4 authors] ...,
Carsten O. Daub
Piero Carninci
Alistair R.R. Forrest
Yoshihide Hayashizaki

First Published May 19, 2011

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