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Research

Xist-induced gene silencing can be predicted from combinations of epigenetic and genomic features" > Kinetics of Xist-induced gene silencing can be predicted from combinations of epigenetic and genomic features

Lisa Barros de Andrade e Sousa
Iris Jonkers
Laurène Syx
Ilona Dunkel
Julie Chaumeil
Christel Picard Benjamin Foret Chong-Jian Chen
... [+3 authors] ...,
John T. Lis
Edith Heard
Edda G. Schulz
Annalisa Marsico

First Published June 7, 2019

Research

Ellobius species provide insight into the evolutionary dynamics of mammalian sex chromosomes" > Genomes of Ellobius species provide insight into the evolutionary dynamics of mammalian sex chromosomes

Eskeatnaf Mulugeta
Evelyne Wassenaar
Esther Sleddens-Linkels
Wilfred F.J. van IJcken
Edith Heard
J. Anton Grootegoed
Walter Just
Joost Gribnau
Willy M. Baarends

First Published August 10, 2016

Research

The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer

Ronan Chaligné
Tatiana Popova
Marco-Antonio Mendoza-Parra
Mohamed-Ashick M. Saleem
David Gentien
Kristen Ban Tristan Piolot Olivier Leroy Odette Mariani
... [+4 authors] ...,
Hinrich Gronemeyer
Anne Vincent-Salomon
Marc-Henri Stern
Edith Heard

First Published February 4, 2015

Research

Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

Vlad C. Seitan
Andre J. Faure
Ye Zhan
Rachel Patton McCord
Bryan R. Lajoie
Elizabeth Ing-Simmons Boris Lenhard Luca Giorgetti Edith Heard
... [+4 authors] ...,
Amanda G. Fisher
Paul Flicek
Job Dekker
Matthias Merkenschlager

First Published September 3, 2013

Resource

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

Jie Wang
Jiali Zhuang
Sowmya Iyer
XinYing Lin
Troy W. Whitfield
Melissa C. Greven Brian G. Pierce Xianjun Dong Anshul Kundaje Yong Cheng Oliver J. Rando Ewan Birney
... [+7 authors] ...,
Richard M. Myers
William S. Noble
Michael Snyder
Zhiping Weng

First Published September 5, 2012

Research

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

Chao Cheng
Roger Alexander
Renqiang Min
Jing Leng
Kevin Y. Yip
Joel Rozowsky Koon-Kiu Yan Xianjun Dong Sarah Djebali Yijun Ruan Carrie A. Davis Piero Carninci Timo Lassman Thomas R. Gingeras Roderic Guigó
... [+10 authors] ...,
Ewan Birney
Zhiping Weng
Michael Snyder
Mark Gerstein

First Published September 5, 2012

Research

Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells

Bum-Kyu Lee
Akshay A. Bhinge
Anna Battenhouse
Ryan M. McDaniell
Zheng Liu
Lingyun Song Yunyun Ni Ewan Birney
... [+3 authors] ...,
Jason D. Lieb
Terrence S. Furey
Gregory E. Crawford
Vishwanath R. Iyer

First Published November 16, 2011

Resource

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

Lingyun Song
Zhancheng Zhang
Linda L. Grasfeder
Alan P. Boyle
Paul G. Giresi
Bum-Kyu Lee Nathan C. Sheffield Stefan Gräf Mikael Huss Damian Keefe Zheng Liu Darin London Ryan M. McDaniell Yoichiro Shibata Kimberly A. Showers Jeremy M. Simon Teresa Vales Tianyuan Wang Deborah Winter Zhuzhu Zhang Neil D. Clarke Ewan Birney
... [+17 authors] ...,
Vishwanath R. Iyer
Gregory E. Crawford
Jason D. Lieb
Terrence S. Furey

First Published July 12, 2011

Method

Efficient storage of high throughput DNA sequencing data using reference-based compression

Markus Hsi-Yang Fritz
Rasko Leinonen
Guy Cochrane
Ewan Birney

First Published January 18, 2011

Method

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

Alan P. Boyle
Lingyun Song
Bum-Kyu Lee
Darin London
Damian Keefe
Ewan Birney
Vishwanath R. Iyer
Gregory E. Crawford
Terrence S. Furey

First Published November 24, 2010

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