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Resource

The PanOryza pangene catalog of Asian cultivated rice

Bruno Contreras-Moreira
Eshan Sharma
Shradha Saraf
Guy Naamati
Parul Gupta
Justin Elser Dmytro Chebotarov Kapeel Chougule Zhenyuan Lu Sharon Wei Andrew Olson Ian Tsang Disha Lodha Yong Zhou Zhichao Yu Wen Zhao Jianwei Zhang Sandeep Amberkar Kawinnat Sue-Ob Zhi Sun Maria Martin Kenneth L. McNally Doreen Ware Eric W. Deutsch Dario Copetti
... [+20 authors] ...,
Rod A. Wing
Pankaj Jaiswal
Sarah Dyer
Andrew R. Jones

First Published December 12, 2025

Method

Gapless assembly of complete human and plant chromosomes using only nanopore sequencing

Sergey Koren
Zhigui Bao
Andrea Guarracino
Shujun Ou
Sara Goodwin
Katharine M. Jenike Julian Lucas Brandy McNulty Jimin Park Mikko Rautiainen Arang Rhie Dick Roelofs Harrie Schneiders Ilse Vrijenhoek Koen Nijbroek Olle Nordesjo Sergey Nurk Mike Vella Katherine R. Lawrence Doreen Ware Michael C. Schatz Erik Garrison Sanwen Huang
... [+18 authors] ...,
William Richard McCombie
Karen H. Miga
Alexander H.J. Wittenberg
Adam M. Phillippy

First Published November 6, 2024

Research

Comparative transcriptomics of primary cells in vertebrates

Tanvir Alam
Saumya Agrawal
Jessica Severin
Robert S. Young
Robin Andersson
Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
... [+16 authors] ...,
Levon M. Khachigian
Yoshihide Hayashizaki
Piero Carninci
Michiel J.L. de Hoon

First Published July 27, 2020

Research

A high-resolution gene expression atlas links dedicated meristem genes to key architectural traits

Steffen Knauer
Marie Javelle
Lin Li
Xianran Li
Xiaoli Ma
Kokulapalan Wimalanathan Sunita Kumari Robyn Johnston Samuel Leiboff Robert Meeley Patrick S. Schnable Doreen Ware Carolyn Lawrence-Dill
... [+8 authors] ...,
Jianming Yu
Gary J. Muehlbauer
Michael J. Scanlon
Marja C.P. Timmermans

First Published November 19, 2019

Resource

A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing

Bo Wang
Michael Regulski
Elizabeth Tseng
Andrew Olson
Sara Goodwin
W. Richard McCombie
Doreen Ware

First Published April 30, 2018

Research

The frequent evolutionary birth and death of functional promoters in mouse and human

Robert S. Young
Yoshihide Hayashizaki
Robin Andersson
Albin Sandelin
Hideya Kawaji
Masayoshi Itoh Timo Lassmann
... [+2 authors] ...,
Piero Carninci
Wendy A. Bickmore
Alistair R. Forrest
Martin S. Taylor

First Published July 30, 2015

Resource

Digital expression profiling of the compartmentalized translatome of Purkinje neurons

Anton Kratz
Pascal Beguin
Megumi Kaneko
Takahiko Chimura
Ana Maria Suzuki
Atsuko Matsunaga Sachi Kato Nicolas Bertin Timo Lassmann
... [+4 authors] ...,
Réjan Vigot
Piero Carninci
Charles Plessy
Thomas Launey

First Published June 5, 2014

Research

Regulatory modules controlling maize inflorescence architecture

Andrea L. Eveland
Alexander Goldshmidt
Michael Pautler
Kengo Morohashi
Christophe Liseron-Monfils
Michael W. Lewis Sunita Kumari Susumu Hiraga Fang Yang Erica Unger-Wallace Andrew Olson Sarah Hake
... [+7 authors] ...,
Erik Vollbrecht
Erich Grotewold
Doreen Ware
David Jackson

First Published December 4, 2013

Research

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA

Michael Regulski
Zhenyuan Lu
Jude Kendall
Mark T.A. Donoghue
Jon Reinders
Victor Llaca Stephane Deschamps Andrew Smith Dan Levy W. Richard McCombie Scott Tingey
... [+6 authors] ...,
Antoni Rafalski
James Hicks
Doreen Ware
Robert A. Martienssen

First Published June 5, 2013

Resource

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

Thomas Derrien
Rory Johnson
Giovanni Bussotti
Andrea Tanzer
Sarah Djebali
Hagen Tilgner Gregory Guernec David Martin Angelika Merkel David G. Knowles Julien Lagarde Lavanya Veeravalli Xiaoan Ruan Yijun Ruan Timo Lassmann Piero Carninci James B. Brown Leonard Lipovich Jose M. Gonzalez Mark Thomas Carrie A. Davis Ramin Shiekhattar Thomas R. Gingeras
... [+18 authors] ...,
Tim J. Hubbard
Cedric Notredame
Jennifer Harrow
Roderic Guigó

First Published September 5, 2012

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