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Translation-dependent and -independent mRNA decay occur through mutually exclusive pathways defined by ribosome density during T cell activation

Blandine C. Mercier
Emmanuel Labaronne
David Cluet
Laura Guiguettaz
Nicolas Fontrodona
Alicia Bicknell Antoine Corbin Mélanie Wencker Fabien Aube Laurent Modolo
... [+5 authors] ...,
Karina Jouravleva
Didier Auboeuf
Melissa J. Moore
Emiliano P. Ricci

First Published March 20, 2024

Interplay between coding and exonic splicing regulatory sequences

Nicolas Fontrodona
Fabien Aubé
Jean-Baptiste Claude
Hélène Polvèche
Sébastien Lemaire
Léon-Charles Tranchevent
... [+1 authors] ...,
Laurent Modolo
Franck Mortreux
Cyril F. Bourgeois
Didier Auboeuf

First Published April 8, 2019

Identification of protein features encoded by alternative exons using Exon Ontology

Léon-Charles Tranchevent
Fabien Aubé
Louis Dulaurier
Clara Benoit-Pilven
Amandine Rey
Arnaud Poret Emilie Chautard Hussein Mortada François-Olivier Desmet Fatima Zahra Chakrama Maira Alejandra Moreno-Garcia Evelyne Goillot
... [+7 authors] ...,
Stéphane Janczarski
Franck Mortreux
Cyril F. Bourgeois
Didier Auboeuf

First Published April 18, 2017

Read clouds uncover variation in complex regions of the human genome

Alex Bishara
Yuling Liu
Ziming Weng
Dorna Kashef-Haghighi
Daniel E. Newburger
Robert West
Arend Sidow
Serafim Batzoglou

First Published August 18, 2015

Parente2: a fast and accurate method for detecting identity by descent

Jesse M. Rodriguez
Sivan Bercovici
Lin Huang
Roy Frostig
Serafim Batzoglou

First Published October 1, 2014

Endothelial, epithelial, and fibroblast cells exhibit specific splicing programs independently of their tissue of origin

Pierre Mallinjoud
Jean-Philippe Villemin
Hussein Mortada
Micaela Polay Espinoza
François-Olivier Desmet
Samaan Samaan
Emilie Chautard
Léon-Charles Tranchevent
Didier Auboeuf

First Published December 4, 2013

Genome evolution during progression to breast cancer

Daniel E. Newburger
Dorna Kashef-Haghighi
Ziming Weng
Raheleh Salari
Robert T. Sweeney
Alayne L. Brunner Shirley X. Zhu Xiangqian Guo Sushama Varma
... [+4 authors] ...,
Megan L. Troxell
Robert B. West
Serafim Batzoglou
Arend Sidow

First Published April 8, 2013

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

Anshul Kundaje
Sofia Kyriazopoulou-Panagiotopoulou
Max Libbrecht
Cheryl L. Smith
Debasish Raha
Elliott E. Winters
... [+1 authors] ...,
Steven M. Johnson
Michael Snyder
Serafim Batzoglou
Arend Sidow

First Published September 5, 2012

Linking disease associations with regulatory information in the human genome

Marc A. Schaub
Alan P. Boyle
Anshul Kundaje
Serafim Batzoglou
Michael Snyder

First Published September 5, 2012

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Stephen G. Landt
Georgi K. Marinov
Anshul Kundaje
Pouya Kheradpour
Florencia Pauli
Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
... [+38 authors] ...,
Peggy J. Farnham
Jason D. Lieb
Barbara J. Wold
Michael Snyder

First Published September 5, 2012

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