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Research

Sequence features that drive human promoter function and tissue specificity

Jane M. Landolin
David S. Johnson
Nathan D. Trinklein
Shelly F. Aldred
Catherine Medina
Hennady Shulha
Zhiping Weng
Richard M. Myers

First Published May 25, 2010

Methods

Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver

Alayne L. Brunner
David S. Johnson
Si Wan Kim
Anton Valouev
Timothy E. Reddy
Norma F. Neff Elizabeth Anton Catherine Medina Loan Nguyen Eric Chiao Chuba B. Oyolu
... [+6 authors] ...,
Gary P. Schroth
Devin M. Absher
Julie C. Baker
Richard M. Myers

First Published March 9, 2009

LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

David S. Johnson
Wei Li
D. Benjamin Gordon
Arindam Bhattacharjee
Bo Curry
Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
... [+39 authors] ...,
Kevin Struhl
Richard M. Myers
Jason D. Lieb
X. Shirley Liu

First Published February 7, 2008

ARTICLE

De novo discovery of a tissue-specific gene regulatory module in a chordate

David S. Johnson
Qing Zhou
Kasumi Yagi
Nori Satoh
Wing Wong
Arend Sidow

First Published September 16, 2005

LETTER

Ciona exhibit strong correspondence between evolutionary constraint and functional importance" > Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance

David S. Johnson
Brad Davidson
Christopher D. Brown
William C. Smith
Arend Sidow

First Published November 15, 2004