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Your search for returned 51 results

Method

Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs

Michiel de Hoon
Alessandro Bonetti
Charles Plessy
Yoshinari Ando
Chung-Chau Hon
Yuri Ishizu Masayoshi Itoh Sachi Kato Dongyan Lin Sho Maekawa Mitsuyoshi Murata Hiromi Nishiyori Jay W. Shin Jens Stolte Ana Maria Suzuki Michihira Tagami Hazuki Takahashi Supat Thongjuea
... [+13 authors] ...,
Alistair R.R. Forrest
Yoshihide Hayashizaki
Juha Kere
Piero Carninci

First Published August 12, 2022

Research

Comparative transcriptomics of primary cells in vertebrates

Tanvir Alam
Saumya Agrawal
Jessica Severin
Robert S. Young
Robin Andersson
Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
... [+16 authors] ...,
Levon M. Khachigian
Yoshihide Hayashizaki
Piero Carninci
Michiel J.L. de Hoon

First Published July 27, 2020

Research

Replication timing networks reveal a link between transcription regulatory circuits and replication timing control

Juan Carlos Rivera-Mulia
Sebo Kim
Haitham Gabr
Abhijit Chakraborty
Ferhat Ay
Tamer Kahveci
David M. Gilbert

First Published August 21, 2019

Research

Allele-specific control of replication timing and genome organization during development

Juan Carlos Rivera-Mulia
Andrew Dimond
Daniel Vera
Claudia Trevilla-Garcia
Takayo Sasaki
Jared Zimmerman
... [+1 authors] ...,
Catherine Dupont
Joost Gribnau
Peter Fraser
David M. Gilbert

First Published May 7, 2018

Research

The frequent evolutionary birth and death of functional promoters in mouse and human

Robert S. Young
Yoshihide Hayashizaki
Robin Andersson
Albin Sandelin
Hideya Kawaji
Masayoshi Itoh Timo Lassmann
... [+2 authors] ...,
Piero Carninci
Wendy A. Bickmore
Alistair R. Forrest
Martin S. Taylor

First Published July 30, 2015

Research

Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells

Juan Carlos Rivera-Mulia
Quinton Buckley
Takayo Sasaki
Jared Zimmerman
Ruth A. Didier
Kristopher Nazor Jeanne F. Loring Zheng Lian Sherman Weissman Allan J. Robins Thomas C. Schulz Laura Menendez Michael J. Kulik
... [+8 authors] ...,
Stephen Dalton
Haitham Gabr
Tamer Kahveci
David M. Gilbert

First Published June 8, 2015

Research

Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program

Vishnu Dileep
Ferhat Ay
Jiao Sima
Daniel L. Vera
William S. Noble
David M. Gilbert

First Published May 20, 2015

Method

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression

Maxwell W. Libbrecht
Ferhat Ay
Michael M. Hoffman
David M. Gilbert
Jeffrey A. Bilmes
William Stafford Noble

First Published February 12, 2015

Method

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

Hideya Kawaji
Marina Lizio
Masayoshi Itoh
Mutsumi Kanamori-Katayama
Ai Kaiho
Hiromi Nishiyori-Sueki Jay W. Shin Miki Kojima-Ishiyama Mitsuoki Kawano Mitsuyoshi Murata Noriko Ninomiya-Fukuda Sachi Ishikawa-Kato Sayaka Nagao-Sato
... [+8 authors] ...,
Shohei Noma
Yoshihide Hayashizaki
Alistair R.R. Forrest
Piero Carninci

First Published March 27, 2014

Research

Abnormal developmental control of replication-timing domains in pediatric acute lymphoblastic leukemia

Tyrone Ryba
Dana Battaglia
Bill H. Chang
James W. Shirley
Quinton Buckley
Benjamin D. Pope
Meenakshi Devidas
Brian J. Druker
David M. Gilbert

First Published May 24, 2012

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