A complete pedigree-based graph workflow for rare candidate variant analysis
- First Published April 28, 2022
Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation
- First Published June 8, 2018
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
- First Published February 4, 2016
The role of DNA methylation in directing the functional organization of the cancer epigenome
- First Published March 6, 2015
Alignathon: a competitive assessment of whole-genome alignment methods
- First Published October 1, 2014
GENCODE: The reference human genome annotation for The ENCODE Project
- First Published September 5, 2012
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- First Published September 5, 2012
Assemblathon 1: A competitive assessment of de novo short read assembly methods
- First Published September 16, 2011
E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites
- First Published October 3, 2008
Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells
- First Published March 17, 2008
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
- First Published February 7, 2008
28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
- First Published November 5, 2007
Biased clustered substitutions in the human genome: The footprints of male-driven biased gene conversion
- First Published September 4, 2007
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches
- First Published June 13, 2007
Locating mammalian transcription factor binding sites: A survey of computational and experimental techniques
- First Published October 19, 2006
Suz12 binds to silenced regions of the genome in a cell-type-specific manner
- First Published June 2, 2006
Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome
- First Published April 10, 2006
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
- First Published July 15, 2005
Reconstructing large regions of an ancestral mammalian genome in silico
- First Published December 1, 2004
Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing
- First Published October 15, 2004
Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner
- First Published April 1, 2004
Patterns of Insertions and Their Covariation With Substitutions in the Rat, Mouse, and Human Genomes
- First Published April 1, 2004
Identification and Characterization of Multi-Species Conserved Sequences
- First Published December 1, 2003
Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution
- First Published January 1, 2003
Genie—Gene Finding in Drosophila melanogaster " > Genie—Gene Finding in Drosophila melanogaster
- First Published April 1, 2000