Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC
- First Published April 10, 2025
A complete pedigree-based graph workflow for rare candidate variant analysis
- First Published April 28, 2022
Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation
- First Published June 8, 2018
Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators
- First Published December 13, 2016
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
- First Published February 4, 2016
Corrigendum: Unraveling determinants of transcription factor binding outside the core binding site
- First Published September 1, 2015
Core promoter sequence in yeast is a major determinant of expression level
- First Published May 12, 2015
Unraveling determinants of transcription factor binding outside the core binding site
- First Published March 11, 2015
Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters
- First Published October 7, 2014
Alignathon: a competitive assessment of whole-genome alignment methods
- First Published October 1, 2014
Probing the effect of promoters on noise in gene expression using thousands of designed sequences
- First Published July 16, 2014
Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach
- First Published August 15, 2013
Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise
- First Published February 12, 2013
GENCODE: The reference human genome annotation for The ENCODE Project
- First Published September 5, 2012
Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters
- First Published October 18, 2011
Assemblathon 1: A competitive assessment of de novo short read assembly methods
- First Published September 16, 2011
C. elegans" > High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans
- First Published December 22, 2010
p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy
- First Published August 17, 2010
Incorporating nucleosomes into thermodynamic models of transcription regulation
- First Published May 18, 2009
28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
- First Published November 5, 2007
Biased clustered substitutions in the human genome: The footprints of male-driven biased gene conversion
- First Published September 4, 2007
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
- First Published July 15, 2005
Reconstructing large regions of an ancestral mammalian genome in silico
- First Published December 1, 2004
Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing
- First Published October 15, 2004
Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner
- First Published April 1, 2004
Patterns of Insertions and Their Covariation With Substitutions in the Rat, Mouse, and Human Genomes
- First Published April 1, 2004
Identification and Characterization of Multi-Species Conserved Sequences
- First Published December 1, 2003
Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution
- First Published January 1, 2003
Genie—Gene Finding in Drosophila melanogaster " > Genie—Gene Finding in Drosophila melanogaster
- First Published April 1, 2000