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Method

Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation

  • Ian T. Fiddes
  • Joel Armstrong
  • Mark Diekhans
  • Stefanie Nachtweide
  • Zev N. Kronenberg
  • Jason G. Underwood David Gordon Dent Earl Thomas Keane
  • ... [+4 authors] ...,
  • Evan E. Eichler
  • David Haussler
  • Mario Stanke
  • Benedict Paten
  • First Published June 8, 2018
Corrigendum

Corrigendum: Discovery and genotyping of structural variation from long-read haploid genome sequence data

  • John Huddleston
  • Mark J.P. Chaisson
  • Karyn Meltz Steinberg
  • Wes Warren
  • Kendra Hoekzema
  • David Gordon Tina A. Graves-Lindsay Katherine M. Munson Zev N. Kronenberg Laura Vives Paul Peluso Matthew Boitano
  • ... [+7 authors] ...,
  • Chen-Shin Chin
  • Jonas Korlach
  • Richard K. Wilson
  • Evan E. Eichler
  • First Published January 2, 2018
Research

Discovery and genotyping of structural variation from long-read haploid genome sequence data

  • John Huddleston
  • Mark J.P. Chaisson
  • Karyn Meltz Steinberg
  • Wes Warren
  • Kendra Hoekzema
  • David Gordon Tina A. Graves-Lindsay Katherine M. Munson Zev N. Kronenberg Laura Vives Paul Peluso Matthew Boitano
  • ... [+7 authors] ...,
  • Chen-Shin Chin
  • Jonas Korlach
  • Richard K. Wilson
  • Evan E. Eichler
  • First Published November 28, 2016
RESOURCE

ALLPATHS: De novo assembly of whole-genome shotgun microreads

  • Jonathan Butler
  • Iain MacCallum
  • Michael Kleber
  • Ilya A. Shlyakhter
  • Matthew K. Belmonte
  • Eric S. Lander
  • Chad Nusbaum
  • David B. Jaffe
  • First Published March 13, 2008
LETTER

Characterization and predictive discovery of evolutionarily conserved mammalian alternative promoters

  • Daehyun Baek
  • Colleen Davis
  • Brent Ewing
  • David Gordon
  • Phil Green
  • First Published January 8, 2007
ARTICLE

Mycoplasma mobile" > The Complete Genome and Proteome of Mycoplasma mobile

  • Jacob D. Jaffe
  • Nicole Stange-Thomann
  • Cherylyn Smith
  • David DeCaprio
  • Sheila Fisher
  • Jonathan Butler Sarah Calvo Tim Elkins Michael G. FitzGerald Nabil Hafez Chinnappa D. Kodira John Major Shunguang Wang Jane Wilkinson Robert Nicol
  • ... [+10 authors] ...,
  • Chad Nusbaum
  • Bruce Birren
  • Howard C. Berg
  • George M. Church
  • First Published August 2, 2004
METHODS

Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2

  • David B. Jaffe
  • Jonathan Butler
  • Sante Gnerre
  • Evan Mauceli
  • Kerstin Lindblad-Toh
  • Jill P. Mesirov
  • Michael C. Zody
  • Eric S. Lander
  • First Published January 1, 2003
METHODS

ARACHNE: A Whole-Genome Shotgun Assembler

  • Serafim Batzoglou
  • David B. Jaffe
  • Ken Stanley
  • Jonathan Butler
  • Sante Gnerre
  • Evan Mauceli
  • Bonnie Berger
  • Jill P. Mesirov
  • Eric S. Lander
  • First Published January 1, 2002
RESOURCE

Assembly, Annotation, and Integration of UNIGENE Clusters into the Human Genome Draft

  • Degen Zhuo
  • Wei D. Zhao
  • Fred A. Wright
  • Hee-Yung Yang
  • Jian-Ping Wang
  • Russell Sears Troy Baer Do-Hun Kwon David Gordon Solomon Gibbs Dean Dai Qing Yang Joe Spitzner
  • ... [+8 authors] ...,
  • Ralf Krahe
  • Don Stredney
  • Al Stutz
  • Bo Yuan
  • First Published April 11, 2001
METHODS

Automated Finishing with Autofinish

  • David Gordon
  • Cindy Desmarais
  • Phil Green
  • First Published April 1, 2001
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