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Corrigendum

Corrigendum: Direct determination of diploid genome sequences

  • Neil I. Weisenfeld
  • Vijay Kumar
  • Preyas Shah
  • Deanna M. Church
  • David B. Jaffe
  • First Published April 2, 2018
Method

Direct determination of diploid genome sequences

  • Neil I. Weisenfeld
  • Vijay Kumar
  • Preyas Shah
  • Deanna M. Church
  • David B. Jaffe
  • First Published April 5, 2017
Method

Finished bacterial genomes from shotgun sequence data

  • Filipe J. Ribeiro
  • Dariusz Przybylski
  • Shuangye Yin
  • Ted Sharpe
  • Sante Gnerre
  • Amr Abouelleil Aaron M. Berlin Anna Montmayeur Terrance P. Shea Bruce J. Walker Sarah K. Young
  • ... [+6 authors] ...,
  • Carsten Russ
  • Chad Nusbaum
  • Iain MacCallum
  • David B. Jaffe
  • First Published July 24, 2012
Method

Paired-end sequencing of Fosmid libraries by Illumina

  • Louise J.S. Williams
  • Diana G. Tabbaa
  • Na Li
  • Aaron M. Berlin
  • Terrance P. Shea
  • Iain MacCallum Michael S. Lawrence Yotam Drier Gad Getz
  • ... [+4 authors] ...,
  • Sarah K. Young
  • David B. Jaffe
  • Chad Nusbaum
  • Andreas Gnirke
  • First Published July 16, 2012
Resource

Assemblathon 1: A competitive assessment of de novo short read assembly methods

  • Dent Earl
  • Keith Bradnam
  • John St. John
  • Aaron Darling
  • Dawei Lin
  • Joseph Fass Hung On Ken Yu Vince Buffalo Daniel R. Zerbino Mark Diekhans Ngan Nguyen Pramila Nuwantha Ariyaratne Wing-Kin Sung Zemin Ning Matthias Haimel Jared T. Simpson Nuno A. Fonseca İnanç Birol T. Roderick Docking Isaac Y. Ho Daniel S. Rokhsar Rayan Chikhi Dominique Lavenier Guillaume Chapuis Delphine Naquin Nicolas Maillet Michael C. Schatz David R. Kelley Adam M. Phillippy Sergey Koren Shiaw-Pyng Yang Wei Wu Wen-Chi Chou Anuj Srivastava Timothy I. Shaw J. Graham Ruby Peter Skewes-Cox Miguel Betegon Michelle T. Dimon Victor Solovyev Igor Seledtsov Petr Kosarev Denis Vorobyev Ricardo Ramirez-Gonzalez Richard Leggett Dan MacLean Fangfang Xia Ruibang Luo Zhenyu Li Yinlong Xie Binghang Liu Sante Gnerre Iain MacCallum Dariusz Przybylski Filipe J. Ribeiro Shuangye Yin Ted Sharpe Giles Hall Paul J. Kersey Richard Durbin Shaun D. Jackman Jarrod A. Chapman Xiaoqiu Huang Joseph L. DeRisi Mario Caccamo Yingrui Li David B. Jaffe
  • ... [+62 authors] ...,
  • Richard E. Green
  • David Haussler
  • Ian Korf
  • Benedict Paten
  • First Published September 16, 2011
Research

Integrative analysis of the melanoma transcriptome

  • Michael F. Berger
  • Joshua Z. Levin
  • Krishna Vijayendran
  • Andrey Sivachenko
  • Xian Adiconis
  • Jared Maguire Laura A. Johnson James Robinson Roel G. Verhaak Carrie Sougnez Robert C. Onofrio Liuda Ziaugra Kristian Cibulskis Elisabeth Laine Jordi Barretina Wendy Winckler David E. Fisher Gad Getz Matthew Meyerson David B. Jaffe Stacey B. Gabriel Eric S. Lander
  • ... [+17 authors] ...,
  • Reinhard Dummer
  • Andreas Gnirke
  • Chad Nusbaum
  • Levi A. Garraway
  • First Published February 23, 2010
RESOURCE

ALLPATHS: De novo assembly of whole-genome shotgun microreads

  • Jonathan Butler
  • Iain MacCallum
  • Michael Kleber
  • Ilya A. Shlyakhter
  • Matthew K. Belmonte
  • Eric S. Lander
  • Chad Nusbaum
  • David B. Jaffe
  • First Published March 13, 2008
Methods

Quality scores and SNP detection in sequencing-by-synthesis systems

  • William Brockman
  • Pablo Alvarez
  • Sarah Young
  • Manuel Garber
  • Georgia Giannoukos
  • William L. Lee
  • ... [+1 authors] ...,
  • Carsten Russ
  • Eric S. Lander
  • Chad Nusbaum
  • David B. Jaffe
  • First Published January 22, 2008
ARTICLE

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

  • Elliott H. Margulies
  • Gregory M. Cooper
  • George Asimenos
  • Daryl J. Thomas
  • Colin N. Dewey
  • Adam Siepel Ewan Birney Damian Keefe Ariel S. Schwartz Minmei Hou James Taylor Sergey Nikolaev Juan I. Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham James B. Brown Peter Bickel Ian Holmes James C. Mullikin Abel Ureta-Vidal Benedict Paten Eric A. Stone Kate R. Rosenbloom W. James Kent Gerard G. Bouffard Xiaobin Guan Nancy F. Hansen Jacquelyn R. Idol Valerie V.B. Maduro Baishali Maskeri Jennifer C. McDowell Morgan Park Pamela J. Thomas Alice C. Young Robert W. Blakesley Donna M. Muzny Erica Sodergren David A. Wheeler Kim C. Worley Huaiyang Jiang George M. Weinstock Richard A. Gibbs Tina Graves Robert Fulton Elaine R. Mardis Richard K. Wilson Michele Clamp James Cuff Sante Gnerre David B. Jaffe Jean L. Chang Kerstin Lindblad-Toh Eric S. Lander Angie Hinrichs Heather Trumbower Hiram Clawson Ann Zweig Robert M. Kuhn Galt Barber Rachel Harte Donna Karolchik Matthew A. Field Richard A. Moore Carrie A. Matthewson Jacqueline E. Schein Marco A. Marra Stylianos E. Antonarakis Serafim Batzoglou Nick Goldman Ross Hardison David Haussler
  • ... [+68 authors] ...,
  • Webb Miller
  • Lior Pachter
  • Eric D. Green
  • Arend Sidow
  • First Published June 13, 2007
Methods

Ciona savignyi" > Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi

  • Jade P. Vinson
  • David B. Jaffe
  • Keith O'Neill
  • Elinor K. Karlsson
  • Nicole Stange-Thomann
  • Scott Anderson Jill P. Mesirov Nori Satoh Yutaka Satou
  • ... [+4 authors] ...,
  • Chad Nusbaum
  • Bruce Birren
  • James E. Galagan
  • Eric S. Lander
  • First Published August 2, 2005
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