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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

  • Aaron McKenna
  • Matthew Hanna
  • Eric Banks
  • Andrey Sivachenko
  • Kristian Cibulskis
  • Andrew Kernytsky Kiran Garimella
  • ... [+2 authors] ...,
  • David Altshuler
  • Stacey Gabriel
  • Mark Daly
  • Mark A. DePristo
  • First Published July 19, 2010
Letter

Copy number abnormalities in sporadic canine colorectal cancers

  • Jie Tang
  • Shoshona Le
  • Liang Sun
  • Xiuzhen Yan
  • Mucheng Zhang
  • Jennifer MacLeod Bruce LeRoy Nicole Northrup Angela Ellis
  • ... [+4 authors] ...,
  • Timothy J. Yeatman
  • Yanchun Liang
  • Michael E. Zwick
  • Shaying Zhao
  • First Published January 19, 2010
Letter

Alu repeats in primate genomes" > Comparative analysis of Alu repeats in primate genomes

  • George E. Liu
  • Can Alkan
  • Lu Jiang
  • Shaying Zhao
  • Evan E. Eichler
  • First Published May 1, 2009
RESOURCE

Whole population, genome-wide mapping of hidden relatedness

  • Alexander Gusev
  • Jennifer K. Lowe
  • Markus Stoffel
  • Mark J. Daly
  • David Altshuler
  • Jan L. Breslow
  • Jeffrey M. Friedman
  • Itsik Pe'er
  • First Published October 29, 2008
LETTER

A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications

  • Xinwei She
  • Ge Liu
  • Mario Ventura
  • Shaying Zhao
  • Doriana Misceo
  • Roberta Roberto Maria Francesca Cardone
  • ... [+2 authors] ...,
  • Mariano Rocchi
  • Eric D. Green
  • Nicoletta Archidiacano
  • Evan E. Eichler
  • First Published April 10, 2006
Methods

Calibrating a coalescent simulation of human genome sequence variation

  • Stephen F. Schaffner
  • Catherine Foo
  • Stacey Gabriel
  • David Reich
  • Mark J. Daly
  • David Altshuler
  • First Published October 26, 2005
LETTER

Human, Mouse, and Rat Genome Large-Scale Rearrangements: Stability Versus Speciation

  • Shaying Zhao
  • Jyoti Shetty
  • Lihua Hou
  • Arthur Delcher
  • Baoli Zhu
  • Kazutoyo Osoegawa
  • ... [+1 authors] ...,
  • Pieter de Jong
  • William C. Nierman
  • Robert L. Strausberg
  • Claire M. Fraser
  • First Published September 13, 2004
RESOURCE

BAC Resources for the Rat Genome Project

  • Kazutoyo Osoegawa
  • Baoli Zhu
  • Chung Li Shu
  • Teresa Ren
  • Qing Cao
  • Gery M. Vessere
  • ... [+1 authors] ...,
  • Michelle M. Lutz
  • Michael I. Jensen-Seaman
  • Shaying Zhao
  • Pieter J. de Jong
  • First Published April 1, 2004
RESOURCE

Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome

  • Martin Krzywinski
  • John Wallis
  • Claudia Gösele
  • Ian Bosdet
  • Readman Chiu
  • Tina Graves Oliver Hummel Dan Layman Carrie Mathewson Natasja Wye Baoli Zhu Derek Albracht Jennifer Asano Sarah Barber Mabel Brown-John Susanna Chan Steve Chand Alison Cloutier Jonathon Davito Chris Fjell Tony Gaige Detlev Ganten Noreen Girn Kurtis Guggenheimer Heinz Himmelbauer Thomas Kreitler Stephen Leach Darlene Lee Hans Lehrach Michael Mayo Kelly Mead Teika Olson Pawan Pandoh Anna-Liisa Prabhu Heesun Shin Simone Tänzer Jason Thompson Miranda Tsai Jason Walker George Yang Mandeep Sekhon LaDeana Hillier Heike Zimdahl Andre Marziali Kazutoyo Osoegawa Shaying Zhao Asim Siddiqui Pieter J. de Jong Wes Warren Elaine Mardis John D. McPherson Richard Wilson
  • ... [+47 authors] ...,
  • Norbert Hübner
  • Steven Jones
  • Marco Marra
  • Jacqueline Schein
  • First Published April 1, 2004
RESOURCE

1-Mb Resolution Array-Based Comparative Genomic Hybridization Using a BAC Clone Set Optimized for Cancer Gene Analysis

  • Joel Greshock
  • Tara L. Naylor
  • Adam Margolin
  • Sharon Diskin
  • Stephen H. Cleaver
  • P. Andrew Futreal
  • ... [+1 authors] ...,
  • Pieter J. deJong
  • Shaying Zhao
  • Michael Liebman
  • Barbara L. Weber
  • First Published December 12, 2003
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