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Resource

The PanOryza pangene catalog of Asian cultivated rice

  • Bruno Contreras-Moreira
  • Eshan Sharma
  • Shradha Saraf
  • Guy Naamati
  • Parul Gupta
  • Justin Elser Dmytro Chebotarov Kapeel Chougule Zhenyuan Lu Sharon Wei Andrew Olson Ian Tsang Disha Lodha Yong Zhou Zhichao Yu Wen Zhao Jianwei Zhang Sandeep Amberkar Kawinnat Sue-Ob Zhi Sun Maria Martin Kenneth L. McNally Doreen Ware Eric W. Deutsch Dario Copetti
  • ... [+20 authors] ...,
  • Rod A. Wing
  • Pankaj Jaiswal
  • Sarah Dyer
  • Andrew R. Jones
  • First Published December 12, 2025
Research

Oryza" > Continuous infiltration and evolutionary trajectory of nuclear organelle DNA in Oryza

  • Chenbo Gong
  • Yicheng Huang
  • Mengmeng Liu
  • Yong Zhou
  • Yinwei Xu
  • Nahed Mohammed Xintong Qiao Andrea Zuccolo Weibo Xie
  • ... [+4 authors] ...,
  • Rod A. Wing
  • Jianwei Zhang
  • Fei Zhou
  • Yongjun Lin
  • First Published April 25, 2025
Resource

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

  • Aaron McKenna
  • Matthew Hanna
  • Eric Banks
  • Andrey Sivachenko
  • Kristian Cibulskis
  • Andrew Kernytsky Kiran Garimella
  • ... [+2 authors] ...,
  • David Altshuler
  • Stacey Gabriel
  • Mark Daly
  • Mark A. DePristo
  • First Published July 19, 2010
RESOURCE

Whole population, genome-wide mapping of hidden relatedness

  • Alexander Gusev
  • Jennifer K. Lowe
  • Markus Stoffel
  • Mark J. Daly
  • David Altshuler
  • Jan L. Breslow
  • Jeffrey M. Friedman
  • Itsik Pe'er
  • First Published October 29, 2008
LETTER

Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana" > Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

  • Takeshi Itoh
  • Tsuyoshi Tanaka
  • Roberto A. Barrero
  • Chisato Yamasaki
  • Yasuyuki Fujii
  • Phillip B. Hilton Baltazar A. Antonio Hideo Aono Rolf Apweiler Richard Bruskiewich Thomas Bureau Frances Burr Antonio Costa de Oliveira Galina Fuks Takuya Habara Georg Haberer Bin Han Erimi Harada Aiko T. Hiraki Hirohiko Hirochika Douglas Hoen Hiroki Hokari Satomi Hosokawa Yue Hsing Hiroshi Ikawa Kazuho Ikeo Tadashi Imanishi Yukiyo Ito Pankaj Jaiswal Masako Kanno Yoshihiro Kawahara Toshiyuki Kawamura Hiroaki Kawashima Jitendra P. Khurana Shoshi Kikuchi Setsuko Komatsu Kanako O. Koyanagi Hiromi Kubooka Damien Lieberherr Yao-Cheng Lin David Lonsdale Takashi Matsumoto Akihiro Matsuya W. Richard McCombie Joachim Messing Akio Miyao Nicola Mulder Yoshiaki Nagamura Jongmin Nam Nobukazu Namiki Hisataka Numa Shin Nurimoto Claire O’Donovan Hajime Ohyanagi Toshihisa Okido Satoshi OOta Naoki Osato Lance E. Palmer Francis Quetier Saurabh Raghuvanshi Naomi Saichi Hiroaki Sakai Yasumichi Sakai Katsumi Sakata Tetsuya Sakurai Fumihiko Sato Yoshiharu Sato Heiko Schoof Motoaki Seki Michie Shibata Yuji Shimizu Kazuo Shinozaki Yuji Shinso Nagendra K. Singh Brian Smith-White Jun-ichi Takeda Motohiko Tanino Tatiana Tatusova Supat Thongjuea Fusano Todokoro Mika Tsugane Akhilesh K. Tyagi Apichart Vanavichit Aihui Wang Rod A. Wing Kaori Yamaguchi Mayu Yamamoto Naoyuki Yamamoto Yeisoo Yu Hao Zhang Qiang Zhao
  • ... [+86 authors] ...,
  • Kenichi Higo
  • Benjamin Burr
  • Takashi Gojobori
  • Takuji Sasaki
  • First Published January 8, 2007
LETTER

Oryza australiensis, a wild relative of rice" > Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

  • Benoit Piegu
  • Romain Guyot
  • Nathalie Picault
  • Anne Roulin
  • Abhijit Saniyal
  • Hyeran Kim Kristi Collura
  • ... [+2 authors] ...,
  • Darshan S. Brar
  • Scott Jackson
  • Rod A. Wing
  • Olivier Panaud
  • First Published September 8, 2006
LETTER

Gossypium " > Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

  • Jennifer S. Hawkins
  • HyeRan Kim
  • John D. Nason
  • Rod A. Wing
  • Jonathan F. Wendel
  • First Published September 5, 2006
LETTER

Uneven chromosome contraction and expansion in the maize genome

  • Rémy Bruggmann
  • Arvind K. Bharti
  • Heidrun Gundlach
  • Jinsheng Lai
  • Sarah Young
  • Ana C. Pontaroli Fusheng Wei Georg Haberer Galina Fuks Chunguang Du Christina Raymond Matt C. Estep Renyi Liu Jeffrey L. Bennetzen Agnes P. Chan Pablo D. Rabinowicz John Quackenbush W. Brad Barbazuk Rod A. Wing Bruce Birren
  • ... [+15 authors] ...,
  • Chad Nusbaum
  • Steve Rounsley
  • Klaus F.X. Mayer
  • Joachim Messing
  • First Published August 10, 2006
RESOURCE

Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza" > The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

  • Jetty S.S. Ammiraju
  • Meizhong Luo
  • José L. Goicoechea
  • Wenming Wang
  • Dave Kudrna
  • Christopher Mueller Jayson Talag HyeRan Kim Nicholas B. Sisneros Barbara Blackmon Eric Fang Jeffery B. Tomkins Darshan Brar David MacKill Susan McCouch Nori Kurata Georgina Lambert David W. Galbraith K. Arumuganathan Kiran Rao Jason G. Walling Navdeep Gill Yeisoo Yu
  • ... [+18 authors] ...,
  • Phillip SanMiguel
  • Carol Soderlund
  • Scott Jackson
  • Rod A. Wing
  • First Published December 12, 2005
Methods

Calibrating a coalescent simulation of human genome sequence variation

  • Stephen F. Schaffner
  • Catherine Foo
  • Stacey Gabriel
  • David Reich
  • Mark J. Daly
  • David Altshuler
  • First Published October 26, 2005
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