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Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data

  • Kaixuan Luo
  • Jianling Zhong
  • Alexias Safi
  • Linda K. Hong
  • Alok K. Tewari
  • Lingyun Song
  • ... [+1 authors] ...,
  • Timothy E. Reddy
  • Li Ma
  • Gregory E. Crawford
  • Alexander J. Hartemink
  • First Published May 24, 2022

Anopheles gambiae and Anopheles coluzzii" > Genome variation and population structure among 1142 mosquitoes of the African malaria vector species Anopheles gambiae and Anopheles coluzzii

  • Chris S. Clarkson
  • Alistair Miles
  • Nicholas J. Harding
  • Eric R. Lucas
  • C.J. Battey
  • Jorge Edouardo Amaya-Romero Andrew D. Kern Michael C. Fontaine Martin J. Donnelly Mara K.N. Lawniczak Dominic P. Kwiatkowski Martin J. Donnelly Diego Ayala Nora J. Besansky Austin Burt Beniamino Caputo Alessandra della Torre Michael C. Fontaine H. Charles J. Godfray Matthew W. Hahn Andrew D. Kern Dominic P. Kwiatkowski Mara K.N. Lawniczak Janet Midega Samantha O'Loughlin João Pinto Michelle M. Riehle Igor Sharakhov Daniel R. Schrider Kenneth D. Vernick David Weetman Craig S. Wilding Bradley J. White Angola: Arlete D. Troco João Pinto Bioko: Jorge Cano Burkina Faso: Abdoulaye Diabaté Samantha O'Loughlin Austin Burt Cameroon: Carlo Costantini Kyanne R. Rohatgi Nora J. Besansky Côte d'Ivoire: Edi Constant David Weetman Gabon: Nohal Elissa João Pinto Gambia: Davis C. Nwakanma Musa Jawara Ghana: John Essandoh David Weetman Guinea: Boubacar Coulibaly Michelle M. Riehle Kenneth D. Vernick Guinea-Bissau: João Pinto João Dinis Kenya: Janet Midega Charles Mbogo Philip Bejon Mayotte: Gilbert Le Goff Vincent Robert Uganda: Craig S. Wilding David Weetman Henry D. Mawejje Martin J. Donnelly Laboratory crosses: David Weetman Craig S. Wilding Martin J. Donnelly Jim Stalker Kirk A. Rockett Eleanor Drury Daniel Mead Anna E. Jeffreys Christina Hubbart Kate Rowlands Alison T. Isaacs Dushyanth Jyothi Cinzia Malangone
  • ... [+72 authors] ...,
  • Maryam Kamali
  • Victoria Simpson
  • Christa Henrichs
  • Dominic P. Kwiatkowski
  • First Published September 28, 2020

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

  • Dongwon Lee
  • Ashish Kapoor
  • Alexias Safi
  • Lingyun Song
  • Marc K. Halushka
  • Gregory E. Crawford
  • Aravinda Chakravarti
  • First Published August 23, 2018

Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding

  • Ian C. McDowell
  • Alejandro Barrera
  • Anthony M. D'Ippolito
  • Christopher M. Vockley
  • Linda K. Hong
  • Sarah M. Leichter Luke C. Bartelt William H. Majoros Lingyun Song Alexias Safi D. Dewran Koçak Charles A. Gersbach
  • ... [+7 authors] ...,
  • Alexander J. Hartemink
  • Gregory E. Crawford
  • Barbara E. Engelhardt
  • Timothy E. Reddy
  • First Published August 10, 2018

Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

  • Juan L. Mateo
  • Debbie L.C. van den Berg
  • Maximilian Haeussler
  • Daniela Drechsel
  • Zachary B. Gaber
  • Diogo S. Castro Paul Robson Q. Richard Lu Gregory E. Crawford Paul Flicek
  • ... [+5 authors] ...,
  • Laurence Ettwiller
  • Joachim Wittbrodt
  • François Guillemot
  • Ben Martynoga
  • First Published December 1, 2017

Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha

  • James M. Davison
  • Colin R. Lickwar
  • Lingyun Song
  • Ghislain Breton
  • Gregory E. Crawford
  • John F. Rawls
  • First Published April 6, 2017

Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

  • Juan L. Mateo
  • Debbie L.C. van den Berg
  • Maximilian Haeussler
  • Daniela Drechsel
  • Zachary B. Gaber
  • Diogo S. Castro Paul Robson Q. Richard Lu Gregory E. Crawford Paul Flicek
  • ... [+5 authors] ...,
  • Laurence Ettwiller
  • Joachim Wittbrodt
  • François Guillemot
  • Ben Martynoga
  • First Published November 1, 2016

Mapping nucleosome positions using DNase-seq

  • Jianling Zhong
  • Kaixuan Luo
  • Peter S. Winter
  • Gregory E. Crawford
  • Edwin S. Iversen
  • Alexander J. Hartemink
  • First Published January 15, 2016

Daphnia pulex" > High mutational rates of large-scale duplication and deletion in Daphnia pulex

  • Nathan Keith
  • Abraham E. Tucker
  • Craig E. Jackson
  • Way Sung
  • José Ignacio Lucas Lledó
  • Daniel R. Schrider Sarah Schaack Jeffry L. Dudycha
  • ... [+3 authors] ...,
  • Matthew Ackerman
  • Andrew J. Younge
  • Joseph R. Shaw
  • Michael Lynch
  • First Published October 30, 2015

Genome-wide specificity of DNA binding, gene regulation, and chromatin remodeling by TALE- and CRISPR/Cas9-based transcriptional activators

  • Lauren R. Polstein
  • Pablo Perez-Pinera
  • D. Dewran Kocak
  • Christopher M. Vockley
  • Peggy Bledsoe
  • Lingyun Song
  • ... [+1 authors] ...,
  • Alexias Safi
  • Gregory E. Crawford
  • Timothy E. Reddy
  • Charles A. Gersbach
  • First Published May 29, 2015
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