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Method

DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly

  • Ilari Scheinin
  • Daoud Sie
  • Henrik Bengtsson
  • Mark A. van de Wiel
  • Adam B. Olshen
  • Hinke F. van Thuijl Hendrik F. van Essen Paul P. Eijk François Rustenburg Gerrit A. Meijer Jaap C. Reijneveld
  • ... [+6 authors] ...,
  • Pieter Wesseling
  • Daniel Pinkel
  • Donna G. Albertson
  • Bauke Ylstra
  • First Published September 18, 2014
Resource

Coelacanth genomes reveal signatures for evolutionary transition from water to land

  • Masato Nikaido
  • Hideki Noguchi
  • Hidenori Nishihara
  • Atsushi Toyoda
  • Yutaka Suzuki
  • Rei Kajitani Hikoyu Suzuki Miki Okuno Mitsuto Aibara Benjamin P. Ngatunga Semvua I. Mzighani Hassan W.J. Kalombo Kawilarang W.A. Masengi Josef Tuda Sadao Nogami Ryuichiro Maeda Masamitsu Iwata Yoshitaka Abe Koji Fujimura Masataka Okabe Takanori Amano Akiteru Maeno Toshihiko Shiroishi Takehiko Itoh
  • ... [+19 authors] ...,
  • Sumio Sugano
  • Yuji Kohara
  • Asao Fujiyama
  • Norihiro Okada
  • First Published July 22, 2013
Research

Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns

  • Wei Qu
  • Shin-ichi Hashimoto
  • Atsuko Shimada
  • Yoichiro Nakatani
  • Kazuki Ichikawa
  • Taro L. Saito Katsumi Ogoshi Kouji Matsushima
  • ... [+3 authors] ...,
  • Yutaka Suzuki
  • Sumio Sugano
  • Hiroyuki Takeda
  • Shinichi Morishita
  • First Published June 11, 2012
Resource

Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis

  • Riu Yamashita
  • Nuankanya P. Sathira
  • Akinori Kanai
  • Kousuke Tanimoto
  • Takako Arauchi
  • Yoshiaki Tanaka
  • ... [+1 authors] ...,
  • Shin-ichi Hashimoto
  • Sumio Sugano
  • Kenta Nakai
  • Yutaka Suzuki
  • First Published March 3, 2011
LETTER

Distinct class of putative “non-conserved” promoters in humans: Comparative studies of alternative promoters of human and mouse genes

  • Katsuki Tsuritani
  • Takuma Irie
  • Riu Yamashita
  • Yuta Sakakibara
  • Hiroyuki Wakaguri
  • Akinori Kanai
  • ... [+1 authors] ...,
  • Junko Mizushima-Sugano
  • Sumio Sugano
  • Kenta Nakai
  • Yutaka Suzuki
  • First Published June 13, 2007
LETTER

Toxoplasma gondii" > Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii

  • Asis Khan
  • Ulrike Böhme
  • Krystyna A. Kelly
  • Ellen Adlem
  • Karen Brooks
  • Mark Simmonds Karen Mungall Michael A. Quail Claire Arrowsmith Tracey Chillingworth Carol Churcher David Harris Matthew Collins Nigel Fosker Audrey Fraser Zahra Hance Kay Jagels Sharon Moule Lee Murphy Susan O'Neil Marie-Adele Rajandream David Saunders Kathy Seeger Sally Whitehead Thomas Mayr Xuenan Xuan Junichi Watanabe Yutaka Suzuki Hiroyuki Wakaguri Sumio Sugano Chihiro Sugimoto Ian Paulsen Aaron J. Mackey David S. Roos Neil Hall
  • ... [+30 authors] ...,
  • Matthew Berriman
  • Bart Barrell
  • L. David Sibley
  • James W. Ajioka
  • First Published August 10, 2006
LETTER

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

  • Kouichi Kimura
  • Ai Wakamatsu
  • Yutaka Suzuki
  • Toshio Ota
  • Tetsuo Nishikawa
  • Riu Yamashita Jun-ichi Yamamoto Mitsuo Sekine Katsuki Tsuritani Hiroyuki Wakaguri Shizuko Ishii Tomoyasu Sugiyama Kaoru Saito Yuko Isono Ryotaro Irie Norihiro Kushida Takahiro Yoneyama Rie Otsuka Katsuhiro Kanda Takahide Yokoi Hiroshi Kondo Masako Wagatsuma Katsuji Murakawa Shinichi Ishida Tadashi Ishibashi Asako Takahashi-Fujii Tomoo Tanase Keiichi Nagai
  • ... [+23 authors] ...,
  • Hisashi Kikuchi
  • Kenta Nakai
  • Takao Isogai
  • Sumio Sugano
  • First Published December 12, 2005
Methods

Mapping segmental and sequence variations among laboratory mice using BAC array CGH

  • Antoine M. Snijders
  • Norma J. Nowak
  • Bing Huey
  • Jane Fridlyand
  • Sindy Law
  • Jeffrey Conroy Taku Tokuyasu Kubilay Demir Readman Chiu Jian-Hua Mao Ajay N. Jain
  • ... [+6 authors] ...,
  • Steven J.M. Jones
  • Allan Balmain
  • Daniel Pinkel
  • Donna G. Albertson
  • First Published February 1, 2005
LETTER

Analysis of Small Human Proteins Reveals the Translation of Upstream Open Reading Frames of mRNAs

  • Masaaki Oyama
  • Chiharu Itagaki
  • Hiroko Hata
  • Yutaka Suzuki
  • Tomonori Izumi
  • Tohru Natsume
  • Toshiaki Isobe
  • Sumio Sugano
  • First Published October 15, 2004
LETTER

Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions

  • Yutaka Suzuki
  • Riu Yamashita
  • Matsuyuki Shirota
  • Yuta Sakakibara
  • Joe Chiba
  • Junko Mizushima-Sugano
  • Kenta Nakai
  • Sumio Sugano
  • First Published September 1, 2004
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