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Research

Callithrix jacchus genome" > Discovery of a new repeat family in the Callithrix jacchus genome

  • Miriam K. Konkel
  • Brygg Ullmer
  • Erika L. Arceneaux
  • Sreeja Sanampudi
  • Sarah A. Brantley
  • Robert Hubley
  • Arian F.A. Smit
  • Mark A. Batzer
  • First Published February 25, 2016
Method

DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly

  • Ilari Scheinin
  • Daoud Sie
  • Henrik Bengtsson
  • Mark A. van de Wiel
  • Adam B. Olshen
  • Hinke F. van Thuijl Hendrik F. van Essen Paul P. Eijk François Rustenburg Gerrit A. Meijer Jaap C. Reijneveld
  • ... [+6 authors] ...,
  • Pieter Wesseling
  • Daniel Pinkel
  • Donna G. Albertson
  • Bauke Ylstra
  • First Published September 18, 2014
Method

Alu insertions in diverse human populations" > Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations

  • David J. Witherspoon
  • Yuhua Zhang
  • Jinchuan Xing
  • W. Scott Watkins
  • Hongseok Ha
  • Mark A. Batzer
  • Lynn B. Jorde
  • First Published April 18, 2013
Perspective

Reading TE leaves: New approaches to the identification of transposable element insertions

  • David A. Ray
  • Mark A. Batzer
  • First Published June 1, 2011
Letter

5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome

  • Annette Damert
  • Julija Raiz
  • Axel V. Horn
  • Johannes Löwer
  • Hui Wang
  • Jinchuan Xing
  • Mark A. Batzer
  • Roswitha Löwer
  • Gerald G. Schumann
  • First Published August 3, 2009
Letter

Mobile elements create structural variation: Analysis of a complete human genome

  • Jinchuan Xing
  • Yuhua Zhang
  • Kyudong Han
  • Abdel Halim Salem
  • Shurjo K. Sen
  • Chad D. Huff Qiong Zhou
  • ... [+2 authors] ...,
  • Ewen F. Kirkness
  • Samuel Levy
  • Mark A. Batzer
  • Lynn B. Jorde
  • First Published May 13, 2009
LETTER

Monodelphis domestica" > Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

  • Andrew J. Gentles
  • Matthew J. Wakefield
  • Oleksiy Kohany
  • Wanjun Gu
  • Mark A. Batzer
  • David D. Pollock
  • Jerzy Jurka
  • First Published May 10, 2007
LETTER

Alu amplification" > Under the genomic radar: The Stealth model of Alu amplification

  • Kyudong Han
  • Jinchuan Xing
  • Hui Wang
  • Dale J. Hedges
  • Randall K. Garber
  • Richard Cordaux
  • Mark A. Batzer
  • First Published May 2, 2005
Methods

Mapping segmental and sequence variations among laboratory mice using BAC array CGH

  • Antoine M. Snijders
  • Norma J. Nowak
  • Bing Huey
  • Jane Fridlyand
  • Sindy Law
  • Jeffrey Conroy Taku Tokuyasu Kubilay Demir Readman Chiu Jian-Hua Mao Ajay N. Jain
  • ... [+6 authors] ...,
  • Steven J.M. Jones
  • Allan Balmain
  • Daniel Pinkel
  • Donna G. Albertson
  • First Published February 1, 2005
LETTER

Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages" > Differential Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages

  • Dale J. Hedges
  • Pauline A. Callinan
  • Richard Cordaux
  • Jinchuan Xing
  • Erin Barnes
  • Mark A. Batzer
  • First Published June 1, 2004
LETTER

Alu Insertion Polymorphisms" > Genetic Variation Among World Populations: Inferences From 100 Alu Insertion Polymorphisms

  • W. Scott Watkins
  • Alan R. Rogers
  • Christopher T. Ostler
  • Steve Wooding
  • Michael J. Bamshad
  • Anna-Marie E. Brassington Marion L. Carroll Son V. Nguyen Jerilyn A. Walker B.V. Ravi Prasad
  • ... [+5 authors] ...,
  • P. Govinda Reddy
  • Pradipta K. Das
  • Mark A. Batzer
  • Lynn B. Jorde
  • First Published June 12, 2003
LETTER

Y Chromosome STR Haplotypes and the Genetic Structure of U.S. Populations of African, European, and Hispanic Ancestry

  • Manfred Kayser
  • Silke Brauer
  • Hiltrud Schädlich
  • Mechthild Prinz
  • Mark A. Batzer
  • Peter A. Zimmerman
  • B. A. Boatin
  • Mark Stoneking
  • First Published April 1, 2003
ARTICLE

Large-Scale Variation Among Human and Great Ape Genomes Determined by Array Comparative Genomic Hybridization

  • Devin P. Locke
  • Richard Segraves
  • Lucia Carbone
  • Nicoletta Archidiacono
  • Donna G. Albertson
  • Daniel Pinkel
  • Evan E. Eichler
  • First Published March 1, 2003
METHODS

Whole Genome Analysis of Genetic Alterations in Small DNA Samples Using Hyperbranched Strand Displacement Amplification and Array–CGH

  • José M. Lage
  • John H. Leamon
  • Tanja Pejovic
  • Stefan Hamann
  • Michelle Lacey
  • Deborah Dillon Richard Segraves Bettina Vossbrinck Antonio González
  • ... [+4 authors] ...,
  • Daniel Pinkel
  • Donna G. Albertson
  • Jose Costa
  • Paul M. Lizardi
  • First Published February 1, 2003
REVIEW

Mammalian Retroelements

  • Prescott L. Deininger
  • Mark A. Batzer
  • First Published October 1, 2002
LETTER

Active Alu Element “A-Tails”: Size Does Matter

  • Astrid M. Roy-Engel
  • Abdel-Halim Salem
  • Oluwatosin O. Oyeniran
  • Lisa Deininger
  • Dale J. Hedges
  • Gail E. Kilroy
  • Mark A. Batzer
  • Prescott L. Deininger
  • First Published August 21, 2002
LETTER

Patterns of Human Diversity, within and among Continents, Inferred from Biallelic DNA Polymorphisms

  • Chiara Romualdi
  • David Balding
  • Ivane S. Nasidze
  • Gregory Risch
  • Myles Robichaux
  • Stephen T. Sherry
  • Mark Stoneking
  • Mark A. Batzer
  • Guido Barbujani
  • First Published April 1, 2002
METHODS

Fully Automatic Quantification of Microarray Image Data

  • Ajay N. Jain
  • Taku A. Tokuyasu
  • Antoine M. Snijders
  • Richard Segraves
  • Donna G. Albertson
  • Daniel Pinkel
  • First Published February 1, 2002
LETTER

Genetic Evidence on the Origins of Indian Caste Populations

  • Michael Bamshad
  • Toomas Kivisild
  • W. Scott Watkins
  • Mary E. Dixon
  • Chris E. Ricker
  • Baskara B. Rao J. Mastan Naidu B.V. Ravi Prasad P. Govinda Reddy Arani Rasanayagam Surinder S. Papiha Richard Villems Alan J. Redd Michael F. Hammer
  • ... [+9 authors] ...,
  • Son V. Nguyen
  • Marion L. Carroll
  • Mark A. Batzer
  • Lynn B. Jorde
  • First Published May 8, 2001
LETTER

Reading between the LINEs: Human Genomic Variation Induced by LINE-1 Retrotransposition

  • Fang-miin Sheen
  • Stephen T. Sherry
  • Gregory M. Risch
  • Myles Robichaux
  • Ivane Nasidze
  • Mark Stoneking
  • Mark A. Batzer
  • Gary D. Swergold
  • First Published October 1, 2000
ARTICLE

Potential Gene Conversion and Source Genes for Recently Integrated Alu Elements

  • Astrid M. Roy
  • Marion L. Carroll
  • Son V. Nguyen
  • Abdel-Halim Salem
  • Michael Oldridge
  • Andrew O. M. Wilkie
  • Mark A. Batzer
  • Prescott L. Deininger
  • First Published October 1, 2000
LETTER

AluInsertion Polymorphisms and Human Evolution: Evidence for a Larger Population Size in Africa " > AluInsertion Polymorphisms and Human Evolution: Evidence for a Larger Population Size in Africa

  • Mark Stoneking
  • Jennifer J. Fontius
  • Stephanie L. Clifford
  • Himla Soodyall
  • Santosh S. Arcot
  • Nilmani Saha
  • ... [+1 authors] ...,
  • Trefor Jenkins
  • Mohammad A. Tahir
  • Prescott L. Deininger
  • Mark A. Batzer
  • First Published November 1, 1997
INSIGHT/OUTLOOK

Modeling Human Evolution—To Tree or Not to Tree?

  • Stephen T. Sherry
  • Mark A. Batzer
  • First Published October 1, 1997
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