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Method

DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly

  • Ilari Scheinin
  • Daoud Sie
  • Henrik Bengtsson
  • Mark A. van de Wiel
  • Adam B. Olshen
  • Hinke F. van Thuijl Hendrik F. van Essen Paul P. Eijk François Rustenburg Gerrit A. Meijer Jaap C. Reijneveld
  • ... [+6 authors] ...,
  • Pieter Wesseling
  • Daniel Pinkel
  • Donna G. Albertson
  • Bauke Ylstra
  • First Published September 18, 2014
Letter

Schizosaccharomyces pombe causes nucleosome loss in both promoters and coding regions of activated genes" > Nitrogen depletion in the fission yeast Schizosaccharomyces pombe causes nucleosome loss in both promoters and coding regions of activated genes

  • Carolina Kristell
  • Jakub Orzechowski Westholm
  • Ida Olsson
  • Hans Ronne
  • Jan Komorowski
  • Pernilla Bjerling
  • First Published January 19, 2010
Letter

Nucleosomes are well positioned in exons and carry characteristic histone modifications

  • Robin Andersson
  • Stefan Enroth
  • Alvaro Rada-Iglesias
  • Claes Wadelius
  • Jan Komorowski
  • First Published August 17, 2009
LETTER

Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders

  • Alvaro Rada-Iglesias
  • Adam Ameur
  • Philipp Kapranov
  • Stefan Enroth
  • Jan Komorowski
  • Thomas R. Gingeras
  • Claes Wadelius
  • First Published January 29, 2008
ARTICLE

Butyrate mediates decrease of histone acetylation centered on transcription start sites and down-regulation of associated genes

  • Alvaro Rada-Iglesias
  • Stefan Enroth
  • Adam Ameur
  • Christoph M. Koch
  • Gayle K. Clelland
  • Patricia Respuela-Alonso Sarah Wilcox Oliver M. Dovey Peter D. Ellis
  • ... [+4 authors] ...,
  • Cordelia F. Langford
  • Ian Dunham
  • Jan Komorowski
  • Claes Wadelius
  • First Published June 13, 2007
Methods

Discovering regulatory binding-site modules using rule-based learning

  • Torgeir R. Hvidsten
  • Bartosz Wilczyński
  • Andriy Kryshtafovych
  • Jerzy Tiuryn
  • Jan Komorowski
  • Krzysztof Fidelis
  • First Published June 1, 2005
Methods

Mapping segmental and sequence variations among laboratory mice using BAC array CGH

  • Antoine M. Snijders
  • Norma J. Nowak
  • Bing Huey
  • Jane Fridlyand
  • Sindy Law
  • Jeffrey Conroy Taku Tokuyasu Kubilay Demir Readman Chiu Jian-Hua Mao Ajay N. Jain
  • ... [+6 authors] ...,
  • Steven J.M. Jones
  • Allan Balmain
  • Daniel Pinkel
  • Donna G. Albertson
  • First Published February 1, 2005
METHODS

Predicting Gene Ontology Biological Process From Temporal Gene Expression Patterns

  • Astrid Lægreid
  • Torgeir R. Hvidsten
  • Herman Midelfart
  • Jan Komorowski
  • Arne K. Sandvik
  • First Published April 14, 2003
ARTICLE

Large-Scale Variation Among Human and Great Ape Genomes Determined by Array Comparative Genomic Hybridization

  • Devin P. Locke
  • Richard Segraves
  • Lucia Carbone
  • Nicoletta Archidiacono
  • Donna G. Albertson
  • Daniel Pinkel
  • Evan E. Eichler
  • First Published March 1, 2003
METHODS

Whole Genome Analysis of Genetic Alterations in Small DNA Samples Using Hyperbranched Strand Displacement Amplification and Array–CGH

  • José M. Lage
  • John H. Leamon
  • Tanja Pejovic
  • Stefan Hamann
  • Michelle Lacey
  • Deborah Dillon Richard Segraves Bettina Vossbrinck Antonio González
  • ... [+4 authors] ...,
  • Daniel Pinkel
  • Donna G. Albertson
  • Jose Costa
  • Paul M. Lizardi
  • First Published February 1, 2003
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