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Method

Genealogical inference and more flexible sequence clustering using iterative-PopPUNK

  • Bin Zhao
  • John A. Lees
  • Hongjin Wu
  • Chao Yang
  • Daniel Falush
  • First Published May 30, 2023
Methods

Inferring genomic flux in bacteria

  • Xavier Didelot
  • Aaron Darling
  • Daniel Falush
  • First Published November 17, 2008
LETTER

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

  • Yong Cheng
  • David C. King
  • Louis C. Dore
  • Xinmin Zhang
  • Yuepin Zhou
  • Ying Zhang Christine Dorman Demesew Abebe Swathi A. Kumar Francesca Chiaromonte
  • ... [+5 authors] ...,
  • Webb Miller
  • Roland D. Green
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published September 25, 2008
Methods

Overlapping euchromatin/heterochromatin- associated marks are enriched in imprinted gene regions and predict allele-specific modification

  • Bo Wen
  • Hao Wu
  • Hans Bjornsson
  • Roland D. Green
  • Rafael Irizarry
  • Andrew P. Feinberg
  • First Published September 16, 2008
Methods

SNP-specific array-based allele-specific expression analysis

  • Hans T. Bjornsson
  • Thomas J. Albert
  • Christine M. Ladd-Acosta
  • Roland D. Green
  • Michael A. Rongione
  • Christina M. Middle
  • Rafael A. Irizarry
  • Karl W. Broman
  • Andrew P. Feinberg
  • First Published March 27, 2008
LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • David S. Johnson
  • Wei Li
  • D. Benjamin Gordon
  • Arindam Bhattacharjee
  • Bo Curry
  • Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
  • ... [+39 authors] ...,
  • Kevin Struhl
  • Richard M. Myers
  • Jason D. Lieb
  • X. Shirley Liu
  • First Published February 7, 2008
LETTER

Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs

  • Leah O. Barrera
  • Zirong Li
  • Andrew D. Smith
  • Karen C. Arden
  • Webster K. Cavenee
  • Michael Q. Zhang
  • Roland D. Green
  • Bing Ren
  • First Published November 27, 2007
LETTER

Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?" > A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?

  • Xavier Didelot
  • Mark Achtman
  • Julian Parkhill
  • Nicholas R. Thomson
  • Daniel Falush
  • First Published November 7, 2006
Methods

Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements

  • Josée Dostie
  • Todd A. Richmond
  • Ramy A. Arnaout
  • Rebecca R. Selzer
  • William L. Lee
  • Tracey A. Honan Eric D. Rubio Anton Krumm
  • ... [+3 authors] ...,
  • Justin Lamb
  • Chad Nusbaum
  • Roland D. Green
  • Job Dekker
  • First Published September 5, 2006
Methods

Comparative isoschizomer profiling of cytosine methylation: The HELP assay

  • Batbayar Khulan
  • Reid F. Thompson
  • Kenny Ye
  • Melissa J. Fazzari
  • Masako Suzuki
  • Edyta Stasiek Maria E. Figueroa Jacob L. Glass Quan Chen Cristina Montagna Eli Hatchwell Rebecca R. Selzer
  • ... [+7 authors] ...,
  • Todd A. Richmond
  • Roland D. Green
  • Ari Melnick
  • John M. Greally
  • First Published June 29, 2006
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