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Method

Genealogical inference and more flexible sequence clustering using iterative-PopPUNK

  • Bin Zhao
  • John A. Lees
  • Hongjin Wu
  • Chao Yang
  • Daniel Falush
  • First Published May 30, 2023
Research

Promoter architecture of mouse olfactory receptor genes

  • Charles Plessy
  • Giovanni Pascarella
  • Nicolas Bertin
  • Altuna Akalin
  • Claudia Carrieri
  • Anne Vassalli Dejan Lazarevic Jessica Severin Christina Vlachouli Roberto Simone Geoffrey J. Faulkner Jun Kawai Carsten O. Daub Silvia Zucchelli Yoshihide Hayashizaki
  • ... [+10 authors] ...,
  • Peter Mombaerts
  • Boris Lenhard
  • Stefano Gustincich
  • Piero Carninci
  • First Published December 22, 2011
Methods

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

  • Michiel J.L. de Hoon
  • Ryan J. Taft
  • Takehiro Hashimoto
  • Mutsumi Kanamori-Katayama
  • Hideya Kawaji
  • Mitsuoki Kawano Mami Kishima Timo Lassmann Geoffrey J. Faulkner John S. Mattick Carsten O. Daub
  • ... [+6 authors] ...,
  • Piero Carninci
  • Jun Kawai
  • Harukazu Suzuki
  • Yoshihide Hayashizaki
  • First Published January 5, 2010
Methods

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE

  • Eivind Valen
  • Giovanni Pascarella
  • Alistair Chalk
  • Norihiro Maeda
  • Miki Kojima
  • Chika Kawazu Mitsuyoshi Murata Hiromi Nishiyori Dejan Lazarevic Dario Motti Troels Torben Marstrand Man-Hung Eric Tang Xiaobei Zhao Anders Krogh Ole Winther Takahiro Arakawa Jun Kawai Christine Wells Carsten Daub Matthias Harbers
  • ... [+15 authors] ...,
  • Yoshihide Hayashizaki
  • Stefano Gustincich
  • Albin Sandelin
  • Piero Carninci
  • First Published December 11, 2008
Methods

Inferring genomic flux in bacteria

  • Xavier Didelot
  • Aaron Darling
  • Daniel Falush
  • First Published November 17, 2008
LETTER

Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?" > A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?

  • Xavier Didelot
  • Mark Achtman
  • Julian Parkhill
  • Nicholas R. Thomson
  • Daniel Falush
  • First Published November 7, 2006
LETTER

Evolutionary turnover of mammalian transcription start sites

  • Martin C. Frith
  • Jasmina Ponjavic
  • David Fredman
  • Chikatoshi Kai
  • Jun Kawai
  • Piero Carninci
  • Yoshihide Hayshizaki
  • Albin Sandelin
  • First Published May 10, 2006
ARTICLE

Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia

  • Piero Carninci
  • Kazunori Waki
  • Toshiyuki Shiraki
  • Hideaki Konno
  • Kazuhiro Shibata
  • Masayoshi Itoh Katsunori Aizawa Takahiro Arakawa Yoshiyuki Ishii Daisuke Sasaki Hidemasa Bono Shinji Kondo Yuichi Sugahara Rintaro Saito Naoki Osato Shiro Fukuda Kenjiro Sato Akira Watahiki Tomoko Hirozane-Kishikawa Mari Nakamura Yuko Shibata Ayako Yasunishi Noriko Kikuchi Atsushi Yoshiki Moriaki Kusakabe Stefano Gustincich Kirk Beisel William Pavan Vassilis Aidinis Akira Nakagawara William A. Held Hiroo Iwata Tomohiro Kono Hiromitsu Nakauchi Paul Lyons Christine Wells David A. Hume Michela Fagiolini Takao K. Hensch Michelle Brinkmeier Sally Camper Junji Hirota Peter Mombaerts
  • ... [+38 authors] ...,
  • Masami Muramatsu
  • Yasushi Okazaki
  • Jun Kawai
  • Yoshihide Hayashizaki
  • First Published June 2, 2003
Methods

DNA Book

  • Jun Kawai
  • Yoshihide Hayashizaki
  • First Published June 2, 2003
METHODS

A Computer-Based Method of Selecting Clones for a Full-Length cDNA Project: Simultaneous Collection of Negligibly Redundant and Variant cDNAs

  • Naoki Osato
  • Masayoshi Itoh
  • Hideaki Konno
  • Shinji Kondo
  • Kazuhiro Shibata
  • Piero Carninci Toshiyuki Shiraki Akira Shinagawa Takahiro Arakawa
  • ... [+4 authors] ...,
  • Shoshi Kikuchi
  • Kouji Sato
  • Jun Kawai
  • Yoshihide Hayashizaki
  • First Published June 18, 2002
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