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Research

CRX retinopathy models" > Aberrant homeodomain–DNA cooperative dimerization underlies distinct developmental defects in two dominant CRX retinopathy models

  • Yiqiao Zheng
  • Gary D. Stormo
  • Shiming Chen
  • First Published December 23, 2024
Method

Genealogical inference and more flexible sequence clustering using iterative-PopPUNK

  • Bin Zhao
  • John A. Lees
  • Hongjin Wu
  • Chao Yang
  • Daniel Falush
  • First Published May 30, 2023
Research

Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants" > Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants

  • Metewo Selase Enuameh
  • Yuna Asriyan
  • Adam Richards
  • Ryan G. Christensen
  • Victoria L. Hall
  • Majid Kazemian Cong Zhu Hannah Pham Qiong Cheng Charles Blatti Jessie A. Brasefield Matthew D. Basciotta Jianhong Ou Joseph C. McNulty Lihua J. Zhu Susan E. Celniker
  • ... [+11 authors] ...,
  • Saurabh Sinha
  • Gary D. Stormo
  • Michael H. Brodsky
  • Scot A. Wolfe
  • First Published March 7, 2013
Research

Exploring the DNA-recognition potential of homeodomains

  • Stephanie W. Chu
  • Marcus B. Noyes
  • Ryan G. Christensen
  • Brian G. Pierce
  • Lihua J. Zhu
  • Zhiping Weng
  • Gary D. Stormo
  • Scot A. Wolfe
  • First Published April 26, 2012
Methods

Inferring genomic flux in bacteria

  • Xavier Didelot
  • Aaron Darling
  • Daniel Falush
  • First Published November 17, 2008
LETTER

Computational identification and functional validation of regulatory motifs in cartilage-expressed genes

  • Sherri R. Davies
  • Li-Wei Chang
  • Debabrata Patra
  • Xiaoyun Xing
  • Karen Posey
  • Jacqueline Hecht
  • Gary D. Stormo
  • Linda J. Sandell
  • First Published September 4, 2007
Methods

Caenorhabditis elegans" > Identification of muscle-specific regulatory modules in Caenorhabditis elegans

  • Guoyan Zhao
  • Lawrence A. Schriefer
  • Gary D. Stormo
  • First Published February 6, 2007
LETTER

Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?" > A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?

  • Xavier Didelot
  • Mark Achtman
  • Julian Parkhill
  • Nicholas R. Thomson
  • Daniel Falush
  • First Published November 7, 2006
Methods

A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles

  • Li-Wei Chang
  • Rakesh Nagarajan
  • Jeffrey A. Magee
  • Jeffrey Milbrandt
  • Gary D. Stormo
  • First Published January 31, 2006
Methods

Making connections between novel transcription factors and their DNA motifs

  • Kai Tan
  • Lee Ann McCue
  • Gary D. Stormo
  • First Published January 14, 2005
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