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Vertebrates show coordinated elevated expression of mitochondrial and nuclear genes after birth

Hadar Medini
Dan Mishmar

First Published March 4, 2025

Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes

Guanjue Xiang
Xi He
Belinda M. Giardine
Kathryn J. Isaac
Dylan J. Taylor
Rajiv C. McCoy Camden Jansen Cheryl A. Keller Alexander Q. Wixom April Cockburn Amber Miller Qian Qi Yanghua He Yichao Li Jens Lichtenberg Elisabeth F. Heuston Stacie M. Anderson Jing Luan Marit W. Vermunt Feng Yue Michael E.G. Sauria Michael C. Schatz James Taylor Berthold Göttgens Jim R. Hughes Douglas R. Higgs Mitchell J. Weiss Yong Cheng Gerd A. Blobel David M. Bodine
... [+25 authors] ...,
Yu Zhang
Qunhua Li
Shaun Mahony
Ross C. Hardison

First Published July 1, 2024

Corrigendum: Human primitive brain displays negative mitochondrial-nuclear expression correlation of respiratory genes

Gilad Barshad
Amit Blumberg
Tal Cohen
Dan Mishmar

First Published August 25, 2022

Domain-adaptive neural networks improve cross-species prediction of transcription factor binding

Kelly Cochran
Divyanshi Srivastava
Avanti Shrikumar
Akshay Balsubramani
Ross C. Hardison
Anshul Kundaje
Shaun Mahony

First Published January 18, 2022

An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis

Guanjue Xiang
Cheryl A. Keller
Elisabeth Heuston
Belinda M. Giardine
Lin An
Alexander Q. Wixom Amber Miller April Cockburn Michael E.G. Sauria Kathryn Weaver Jens Lichtenberg Berthold Göttgens Qunhua Li David Bodine Shaun Mahony James Taylor Gerd A. Blobel Mitchell J. Weiss Yong Cheng Feng Yue
... [+15 authors] ...,
Jim Hughes
Douglas R. Higgs
Yu Zhang
Ross C. Hardison

First Published March 4, 2020

Corrigendum: Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

Amit Blumberg
Edward J. Rice
Anshul Kundaje
Charles G. Danko
Dan Mishmar

First Published April 1, 2019

A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization

Amit Blumberg
Charles G. Danko
Anshul Kundaje
Dan Mishmar

First Published July 12, 2018

Human primitive brain displays negative mitochondrial-nuclear expression correlation of respiratory genes

Gilad Barshad
Amit Blumberg
Tal Cohen
Dan Mishmar

First Published June 14, 2018

HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient

Tao Yang
Feipeng Zhang
Galip Gürkan Yardımcı
Fan Song
Ross C. Hardison
William Stafford Noble
Feng Yue
Qunhua Li

First Published August 30, 2017

Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

Amit Blumberg
Edward J. Rice
Anshul Kundaje
Charles G. Danko
Dan Mishmar

First Published January 3, 2017

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