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Research

ACTB methylation regulates SMARCA4 genomic occupancy to promote translation and reduce adhesion in colorectal cancer cells

Elina Abaev-Schneiderman
Linh Nguyen
Raz Shalev
Tzofit Elbaz Biton
Anand Chopra
Giritharan Jagadeesan Daniel Sevilla-Sanchez Nili Tickotsky Moskovitz
... [+3 authors] ...,
Liron Levin
Michal Feldman
Capucine Van Rechem
Dan Levy

First Published March 25, 2026

Method

Copolymerization of single-cell nucleic acids into balls of acrylamide gel

Siran Li
Jude Kendall
Sarah Park
Zihua Wang
Joan Alexander
Andrea Moffitt Nissim Ranade Cassidy Danyko Bruno Gegenhuber Stephan Fischer Brian D. Robinson Herbert Lepor Jessica Tollkuhn Jesse Gillis
... [+9 authors] ...,
Eric Brouzes
Alex Krasnitz
Dan Levy
Michael Wigler

First Published November 14, 2019

Method

SMASH, a fragmentation and sequencing method for genomic copy number analysis

Zihua Wang
Peter Andrews
Jude Kendall
Beicong Ma
Inessa Hakker
Linda Rodgers
Michael Ronemus
Michael Wigler
Dan Levy

First Published April 14, 2016

Research

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA

Michael Regulski
Zhenyuan Lu
Jude Kendall
Mark T.A. Donoghue
Jon Reinders
Victor Llaca Stephane Deschamps Andrew Smith Dan Levy W. Richard McCombie Scott Tingey
... [+6 authors] ...,
Antoni Rafalski
James Hicks
Doreen Ware
Robert A. Martienssen

First Published June 5, 2013

Research

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

Weisheng Wu
Yong Cheng
Cheryl A. Keller
Jason Ernst
Swathi Ashok Kumar
Tejaswini Mishra Christapher Morrissey Christine M. Dorman Kuan-Bei Chen Daniela Drautz Belinda Giardine Yoichiro Shibata Lingyun Song Max Pimkin Gregory E. Crawford Terrence S. Furey Manolis Kellis Webb Miller James Taylor Stephan C. Schuster Yu Zhang
... [+16 authors] ...,
Francesca Chiaromonte
Gerd A. Blobel
Mitchell J. Weiss
Ross C. Hardison

First Published July 27, 2011

Method

Genome-wide identification of conserved regulatory function in diverged sequences

Leila Taher
David M. McGaughey
Samantha Maragh
Ivy Aneas
Seneca L. Bessling
Webb Miller
Marcelo A. Nobrega
Andrew S. McCallion
Ivan Ovcharenko

First Published May 31, 2011

Methods

Inferring tumor progression from genomic heterogeneity

Nicholas Navin
Alexander Krasnitz
Linda Rodgers
Kerry Cook
Jennifer Meth
Jude Kendall Michael Riggs Yvonne Eberling Jennifer Troge Vladimir Grubor Dan Levy Pär Lundin
... [+7 authors] ...,
Susanne Månér
Anders Zetterberg
James Hicks
Michael Wigler

First Published November 10, 2009

Article

Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

Yong Cheng
Weisheng Wu
Swathi Ashok Kumar
Duonan Yu
Wulan Deng
Tamara Tripic David C. King Kuan-Bei Chen Ying Zhang Daniela Drautz Belinda Giardine Stephan C. Schuster Webb Miller Francesca Chiaromonte
... [+9 authors] ...,
Yu Zhang
Gerd A. Blobel
Mitchell J. Weiss
Ross C. Hardison

First Published November 3, 2009

LETTER

Thylacinus cynocephalus)" > The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)

Webb Miller
Daniela I. Drautz
Jan E. Janecka
Arthur M. Lesk
Aakrosh Ratan
Lynn P. Tomsho Mike Packard Yeting Zhang Lindsay R. McClellan Ji Qi Fangqing Zhao M. Thomas P. Gilbert Love Dalén Juan Luis Arsuaga Per G.P. Ericson Daniel H. Huson
... [+11 authors] ...,
Kristofer M. Helgen
William J. Murphy
Anders Götherström
Stephan C. Schuster

First Published January 12, 2009

LETTER

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

Yong Cheng
David C. King
Louis C. Dore
Xinmin Zhang
Yuepin Zhou
Ying Zhang Christine Dorman Demesew Abebe Swathi A. Kumar Francesca Chiaromonte
... [+5 authors] ...,
Webb Miller
Roland D. Green
Mitchell J. Weiss
Ross C. Hardison

First Published September 25, 2008

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