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Method

Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and “resurrected” pseudogenes in the mouse genome

  • Markus Brosch
  • Gary I. Saunders
  • Adam Frankish
  • Mark O. Collins
  • Lu Yu
  • James Wright Ruth Verstraten
  • ... [+2 authors] ...,
  • David J. Adams
  • Jennifer Harrow
  • Jyoti S. Choudhary
  • Tim Hubbard
  • First Published April 1, 2011
Resource

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

  • Kim D. Pruitt
  • Jennifer Harrow
  • Rachel A. Harte
  • Craig Wallin
  • Mark Diekhans
  • Donna R. Maglott Steve Searle Catherine M. Farrell Jane E. Loveland Barbara J. Ruef Elizabeth Hart Marie-Marthe Suner Melissa J. Landrum Bronwen Aken Sarah Ayling Robert Baertsch Julio Fernandez-Banet Joshua L. Cherry Val Curwen Michael DiCuccio Manolis Kellis Jennifer Lee Michael F. Lin Michael Schuster Andrew Shkeda Clara Amid Garth Brown Oksana Dukhanina Adam Frankish Jennifer Hart Bonnie L. Maidak Jonathan Mudge Michael R. Murphy Terence Murphy Jeena Rajan Bhanu Rajput Lillian D. Riddick Catherine Snow Charles Steward David Webb Janet A. Weber Laurens Wilming Wenyu Wu Ewan Birney David Haussler
  • ... [+40 authors] ...,
  • Tim Hubbard
  • James Ostell
  • Richard Durbin
  • David Lipman
  • First Published June 4, 2009
ARTICLE

Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions

  • France Denoeud
  • Philipp Kapranov
  • Catherine Ucla
  • Adam Frankish
  • Robert Castelo
  • Jorg Drenkow Julien Lagarde Tyler Alioto Caroline Manzano Jacqueline Chrast Sujit Dike Carine Wyss Charlotte N. Henrichsen Nancy Holroyd Mark C. Dickson Ruth Taylor Zahra Hance Sylvain Foissac Richard M. Myers Jane Rogers Tim Hubbard Jennifer Harrow
  • ... [+17 authors] ...,
  • Roderic Guigó
  • Thomas R. Gingeras
  • Stylianos E. Antonarakis
  • Alexandre Reymond
  • First Published June 13, 2007
ENSEMBL Special

An Overview of Ensembl

  • Ewan Birney
  • T. Daniel Andrews
  • Paul Bevan
  • Mario Caccamo
  • Yuan Chen
  • Laura Clarke Guy Coates James Cuff Val Curwen Tim Cutts Thomas Down Eduardo Eyras Xose M. Fernandez-Suarez Paul Gane Brian Gibbins James Gilbert Martin Hammond Hans-Rudolf Hotz Vivek Iyer Kerstin Jekosch Andreas Kahari Arek Kasprzyk Damian Keefe Stephen Keenan Heikki Lehvaslaiho Graham McVicker Craig Melsopp Patrick Meidl Emmanuel Mongin Roger Pettett Simon Potter Glenn Proctor Mark Rae Steve Searle Guy Slater Damian Smedley James Smith Will Spooner Arne Stabenau James Stalker Roy Storey Abel Ureta-Vidal K. Cara Woodwark Graham Cameron
  • ... [+39 authors] ...,
  • Richard Durbin
  • Anthony Cox
  • Tim Hubbard
  • Michele Clamp
  • First Published April 12, 2004
ARTICLE

X chromosome map at 75-kb STS resolution, revealing extremes of recombination and GC content.

  • R Nagaraja
  • S MacMillan
  • J Kere
  • C Jones
  • S Griffin
  • M Schmatz J Terrell M Shomaker C Jermak C Hott M Masisi S Mumm A Srivastava G Pilia T Featherstone R Mazzarella S Kesterson B McCauley B Railey F Burough V Nowotny
  • ... [+16 authors] ...,
  • M D'Urso
  • D States
  • B Brownstein
  • D Schlessinger
  • First Published March 1, 1997
ARTICLE

4.5-Mb YAC STS contig at 50-kb resolution, spanning Xq25 deletions in two patients with lymphoproliferative syndrome.

  • G Porta
  • S MacMillan
  • R Nagaraja
  • S Mumm
  • I Zucchi
  • G Pilia
  • S Maio
  • T Featherstone
  • D Schlessinger
  • First Published January 1, 1997
ARTICLE

A YAC-based contig of 1.5 Mb spanning the human multidrug resistance gene region and delineating the amplification unit in three human multidrug-resistant cell lines.

  • K Torigoe
  • S Sato
  • H Kusaba
  • K Kohno
  • M Kuwano
  • K Okumura
  • ... [+1 authors] ...,
  • E D Green
  • L C Tsui
  • S W Scherer
  • D Schlessinger
  • First Published October 1, 1995
ARTICLE

Functional expression of yeast artificial chromosome-human multidrug resistance genes in mouse cells.

  • H Kusaba
  • K Kohno
  • K Asakuno
  • M Kuwano
  • K Okumura
  • E D Green
  • D Schlessinger
  • M Wada
  • First Published October 1, 1995
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