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Research

Epigenetic characterization of pseudogenes across human tissues

  • Yunzhe Jiang
  • Beatrice Borsari
  • Mark Gerstein
  • First Published April 15, 2026
Resource

A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq

  • Sophia C. Gaynor-Gillett
  • Lijun Cheng
  • Manman Shi
  • Jason Liu
  • Gaoyuan Wang
  • Megan Spector Qiuyu Guo Le Qi Mary Flaherty Martha Wall Ahyeon Hwang Mengting Gu Zhanlin Chen Yuhang Chen Jennifer R. Moran Jing Zhang
  • ... [+11 authors] ...,
  • Donghoon Lee
  • Mark Gerstein
  • Daniel Geschwind
  • Kevin P. White
  • First Published July 11, 2025
Resource

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024
Research

Long genes linked to autism spectrum disorders harbor broad enhancer-like chromatin domains

  • Ying-Tao Zhao
  • Deborah Y. Kwon
  • Brian S. Johnson
  • Maria Fasolino
  • Janine M. Lamonica
  • Yoon Jung Kim Boxuan Simen Zhao
  • ... [+2 authors] ...,
  • Chuan He
  • Golnaz Vahedi
  • Tae Hoon Kim
  • Zhaolan Zhou
  • First Published May 30, 2018
Method

Mapping and characterizing N6-methyladenine in eukaryotic genomes using single-molecule real-time sequencing

  • Shijia Zhu
  • John Beaulaurier
  • Gintaras Deikus
  • Tao P. Wu
  • Maya Strahl
  • Ziyang Hao Guanzheng Luo James A. Gregory Andrew Chess Chuan He
  • ... [+5 authors] ...,
  • Andrew Xiao
  • Robert Sebra
  • Eric E. Schadt
  • Gang Fang
  • First Published May 15, 2018
Research

Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

  • David Thybert
  • Maša Roller
  • Fábio C.P. Navarro
  • Ian Fiddes
  • Ian Streeter
  • Christine Feig David Martin-Galvez Mikhail Kolmogorov Václav Janoušek Wasiu Akanni Bronwen Aken Sarah Aldridge Varshith Chakrapani William Chow Laura Clarke Carla Cummins Anthony Doran Matthew Dunn Leo Goodstadt Kerstin Howe Matthew Howell Ambre-Aurore Josselin Robert C. Karn Christina M. Laukaitis Lilue Jingtao Fergal Martin Matthieu Muffato Stefanie Nachtweide Michael A. Quail Cristina Sisu Mario Stanke Klara Stefflova Cock Van Oosterhout Frederic Veyrunes Ben Ward Fengtang Yang Golbahar Yazdanifar Amonida Zadissa David J. Adams Alvis Brazma Mark Gerstein Benedict Paten
  • ... [+37 authors] ...,
  • Son Pham
  • Thomas M. Keane
  • Duncan T. Odom
  • Paul Flicek
  • First Published March 21, 2018
Research

One thousand somatic SNVs per skin fibroblast cell set baseline of mosaic mutational load with patterns that suggest proliferative origin

  • Alexej Abyzov
  • Livia Tomasini
  • Bo Zhou
  • Nikolaos Vasmatzis
  • Gianfilippo Coppola
  • Mariangela Amenduni Reenal Pattni Michael Wilson
  • ... [+3 authors] ...,
  • Mark Gerstein
  • Sherman Weissman
  • Alexander E. Urban
  • Flora M. Vaccarino
  • First Published February 24, 2017
Research

N6-methyladenosine in primates" > Evolution of transcript modification by N6-methyladenosine in primates

  • Lijia Ma
  • Boxuan Zhao
  • Kai Chen
  • Amber Thomas
  • Jigyasa H. Tuteja
  • Xin He
  • Chuan He
  • Kevin P. White
  • First Published January 4, 2017
Research

Bacterial infection remodels the DNA methylation landscape of human dendritic cells

  • Alain Pacis
  • Ludovic Tailleux
  • Alexander M. Morin
  • John Lambourne
  • Julia L. MacIsaac
  • Vania Yotova Anne Dumaine Anne Danckaert Francesca Luca Jean-Christophe Grenier Kasper D. Hansen Brigitte Gicquel Miao Yu Athma Pai Chuan He Jenny Tung Tomi Pastinen
  • ... [+12 authors] ...,
  • Michael S. Kobor
  • Roger Pique-Regi
  • Yoav Gilad
  • Luis B. Barreiro
  • First Published September 21, 2015
Research

The dynamics of DNA methylation fidelity during mouse embryonic stem cell self-renewal and differentiation

  • Lei Zhao
  • Ming-an Sun
  • Zejuan Li
  • Xue Bai
  • Miao Yu
  • Min Wang Liji Liang Xiaojian Shao Stephen Arnovitz Qianfei Wang
  • ... [+5 authors] ...,
  • Chuan He
  • Xuemei Lu
  • Jianjun Chen
  • Hehuang Xie
  • First Published May 16, 2014
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