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Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding

Liangxi Wang
Tiegh Taylor
Kumaragurubaran Rathnakumar
Nadiya Khyzha
Minggao Liang
Azad Alizada Laura F. Campitelli Sara E. Pour Zain M. Patel Lina Antounians Ian C. Tobias Huayun Hou Timothy R. Hughes
... [+8 authors] ...,
Sushmita Roy
Jennifer A. Mitchell
Jason E. Fish
Michael D. Wilson

First Published June 6, 2025

The human genome contains over a million autonomous exons

Nicholas Stepankiw
Ally W.H. Yang
Timothy R. Hughes

First Published November 9, 2023

Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences

Arttu Jolma
Jilin Zhang
Estefania Mondragón
Ekaterina Morgunova
Teemu Kivioja
Kaitlin U. Laverty Yimeng Yin Fangjie Zhu Gleb Bourenkov
... [+4 authors] ...,
Quaid Morris
Timothy R. Hughes
Louis James Maher
Jussi Taipale

First Published July 23, 2020

Cannabis sativa identifies extensive rearrangements at the THC/CBD acid synthase loci" > A physical and genetic map of Cannabis sativa identifies extensive rearrangements at the THC/CBD acid synthase loci

Kaitlin U. Laverty
Jake M. Stout
Mitchell J. Sullivan
Hardik Shah
Navdeep Gill
Larry Holbrook Gintaras Deikus
... [+2 authors] ...,
Robert Sebra
Timothy R. Hughes
Jonathan E. Page
Harm van Bakel

First Published November 8, 2018

Multiparameter functional diversity of human C2H2 zinc finger proteins

Frank W. Schmitges
Ernest Radovani
Hamed S. Najafabadi
Marjan Barazandeh
Laura F. Campitelli
Yimeng Yin Arttu Jolma Guoqing Zhong Hongbo Guo Tharsan Kanagalingam Wei F. Dai
... [+6 authors] ...,
Jussi Taipale
Andrew Emili
Jack F. Greenblatt
Timothy R. Hughes

First Published November 16, 2016

Corrigendum: Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells

Jennifer Y. Tan
Tamara Sirey
Frantisek Honti
Bryony Graham
Allison Piovesan
Matthias Merkenschlager
Caleb Webber
Chris P. Ponting
Ana C. Marques

First Published September 1, 2015

Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells

Jennifer Y. Tan
Tamara Sirey
Frantisek Honti
Bryony Graham
Allison Piovesan
Matthias Merkenschlager
Caleb Webber
Chris P. Ponting
Ana C. Marques

First Published March 19, 2015

RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts

Yang I. Li
Luis Sanchez-Pulido
Wilfried Haerty
Chris P. Ponting

First Published December 18, 2014

Violation of the 12/23 rule of genomic V(D)J recombination is common in lymphocytes

Nicholas J. Parkinson
Matthew Roddis
Ben Ferneyhough
Gang Zhang
Adam J. Marsden
Siarhei Maslau Yasmin Sanchez-Pearson Thomas Barthlott Ian R. Humphreys Kristin Ladell
... [+5 authors] ...,
David A. Price
Chris P. Ponting
Georg Hollander
Michael D. Fischer

First Published November 3, 2014

Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia" > Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia

Stephen N. Sansom
Noriko Shikama-Dorn
Saule Zhanybekova
Gretel Nusspaumer
Iain C. Macaulay
Mary E. Deadman
Andreas Heger
Chris P. Ponting
Georg A. Holländer

First Published September 15, 2014

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