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Closing the gaps, and improving somatic structural variant analysis and benchmarking using CHM13-T2T

  • First Published March 17, 2025

Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation

  • First Published December 5, 2024

Corrigendum: Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells

  • First Published September 1, 2015

Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells

  • First Published March 19, 2015

RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts

  • First Published December 18, 2014

Violation of the 12/23 rule of genomic V(D)J recombination is common in lymphocytes

  • First Published November 3, 2014

Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia" > Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia

  • First Published September 15, 2014

Spark: A navigational paradigm for genomic data exploration

  • First Published September 7, 2012

Preparation of high-quality next-generation sequencing libraries from picogram quantities of target DNA

  • First Published November 16, 2011

PRDM9 coincides with stabilization of the recombination landscape in the dog genome" > Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome

  • First Published October 17, 2011

What fraction of the human genome is functional?

  • First Published August 29, 2011

Natural genetic variation caused by small insertions and deletions in the human genome

  • First Published April 1, 2011

A ChIP-seq defined genome-wide map of vitamin D receptor binding: Associations with disease and evolution

  • First Published August 24, 2010

Massive turnover of functional sequence in human and other mammalian genomes

  • First Published August 6, 2010

Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver

  • First Published June 15, 2010

The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance

  • First Published April 29, 2010

Genome assembly quality: Assessment and improvement using the neutral indel model

  • First Published March 19, 2010

The completion of the Mammalian Gene Collection (MGC)

  • First Published September 18, 2009

ABySS: A parallel assembler for short read sequence data

  • First Published February 27, 2009

Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding

  • First Published September 11, 2008

Reduced purifying selection prevails over positive selection in human copy number variant evolution

  • First Published August 7, 2008

The new paradigm of flow cell sequencing

  • First Published June 2, 2008

Defensins and the convergent evolution of platypus and reptile venom genes

  • First Published May 7, 2008

Caenorhabditis elegans operons" > Identification and analysis of internal promoters in Caenorhabditis elegans operons

  • First Published August 21, 2007

Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs

  • First Published March 26, 2007

Locating mammalian transcription factor binding sites: A survey of computational and experimental techniques

  • First Published October 19, 2006

Physical map-assisted whole-genome shotgun sequence assemblies

  • First Published June 1, 2006

Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling" > Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling

  • First Published May 3, 2006

Hotspots of mutation and breakage in dog and human chromosomes

  • First Published December 8, 2005

C. elegans daf-2 mutants using serial analysis of gene expression" > Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression

  • First Published April 18, 2005

Mapping segmental and sequence variations among laboratory mice using BAC array CGH

  • First Published February 1, 2005

Comparative Evolutionary Genomics of Androgen-Binding Protein Genes

  • First Published July 15, 2004

Sockeye: A 3D Environment for Comparative Genomics

  • First Published May 3, 2004

Evolution and Comparative Genomics of Odorant- and Pheromone-Associated Genes in Rodents

  • First Published April 1, 2004

Occurrence and Consequences of Coding Sequence Insertions and Deletions in Mammalian Genomes

  • First Published April 1, 2004

Development and Application of a Salmonid EST Database and cDNA Microarray: Data Mining and Interspecific Hybridization Characteristics

  • First Published February 12, 2004

Elevated Rates of Protein Secretion, Evolution, and Disease Among Tissue-Specific Genes

  • First Published January 5, 2004

Internet Contig Explorer (iCE)—A Tool for Visualizing Clone Fingerprint Maps

  • First Published June 1, 2003

Assessment of SAGE in Transcript Identification

  • First Published May 12, 2003

Software for Automated Analysis of DNA Fingerprinting Gels

  • First Published May 1, 2003

Cryptococcus neoformans " > Temperature-Regulated Transcription in the Pathogenic Fungus Cryptococcus neoformans

  • First Published September 1, 2002

Cryptococcus neoformans " > Physical Maps for Genome Analysis of Serotype A and D Strains of the Fungal Pathogen Cryptococcus neoformans

  • First Published August 21, 2002

Predicting Protein Cellular Localization Using a Domain Projection Method

  • First Published August 1, 2002

Chlamydia Species Reflect an Ancestral Relationship between Chlamydiaceae, Cyanobacteria, and the Chloroplast" > Evidence That Plant-Like Genes in Chlamydia Species Reflect an Ancestral Relationship between Chlamydiaceae, Cyanobacteria, and the Chloroplast

  • First Published July 19, 2002

Systematic Identification of Novel Protein Domain Families Associated with Nuclear Functions

  • First Published January 1, 2002

Caenorhabditis elegans " > Changes in Gene Expression Associated with Developmental Arrest and Longevity in Caenorhabditis elegans

  • First Published July 12, 2001
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