Research
Enhancers with tissue-specific activity are enriched in intronic regions
- First Published July 21, 2021
Corrigendum
Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping
- First Published September 14, 2020
Resource
A limited set of transcriptional programs define major cell types
- First Published July 29, 2020
Resource
Functional annotation of human long noncoding RNAs via molecular phenotyping
- First Published July 27, 2020
Resource
Dynamics of microRNA expression during mouse prenatal development
- First Published October 23, 2019
Research
Drosophila regeneration" > Damage-responsive elements in Drosophila regeneration
- First Published November 20, 2018
Corrigendum
Corrigendum: Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells
- First Published September 1, 2015
Research
Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization
- First Published July 20, 2015
Research
Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells
- First Published March 19, 2015
Research
RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts
- First Published December 18, 2014
Research
Violation of the 12/23 rule of genomic V(D)J recombination is common in lymphocytes
- First Published November 3, 2014
Research
Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia" > Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia
- First Published September 15, 2014
Research
Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia
- First Published November 21, 2013
Method
Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
- First Published September 5, 2012
Resource
GENCODE: The reference human genome annotation for The ENCODE Project
- First Published September 5, 2012
Research
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
- First Published September 5, 2012
Resource
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- First Published September 5, 2012
Research
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
- First Published September 5, 2012
Method
Estimation of alternative splicing variability in human populations
- First Published November 23, 2011
Method
Preparation of high-quality next-generation sequencing libraries from picogram quantities of target DNA
- First Published November 16, 2011
Research
Natural genetic variation caused by small insertions and deletions in the human genome
- First Published April 1, 2011
Research
A ChIP-seq defined genome-wide map of vitamin D receptor binding: Associations with disease and evolution
- First Published August 24, 2010
Research
Massive turnover of functional sequence in human and other mammalian genomes
- First Published August 6, 2010
Method
Genome assembly quality: Assessment and improvement using the neutral indel model
- First Published March 19, 2010
LETTER
Reduced purifying selection prevails over positive selection in human copy number variant evolution
- First Published August 7, 2008
Platypus Special/Letter
Defensins and the convergent evolution of platypus and reptile venom genes
- First Published May 7, 2008
12 | Genomes/Letter
Drosophila genomes" > Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes
- First Published November 7, 2007
LETTER
Structured RNAs in the ENCODE selected regions of the human genome
- First Published June 13, 2007
ARTICLE
The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
- First Published June 13, 2007
ARTICLE
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
- First Published June 13, 2007
ARTICLE
Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
- First Published March 26, 2007
LETTER
Tandem chimerism as a means to increase protein complexity in the human genome
- First Published December 12, 2005
Dog Special/Letters
Hotspots of mutation and breakage in dog and human chromosomes
- First Published December 8, 2005
Chicken Special/Letters
Comparison of splice sites in mammals and chicken
- First Published December 8, 2004
LETTER
Comparative Evolutionary Genomics of Androgen-Binding Protein Genes
- First Published July 15, 2004
LETTER
Evolution and Comparative Genomics of Odorant- and Pheromone-Associated Genes in Rodents
- First Published April 1, 2004
LETTER
Comparative Analysis of Amino Acid Repeats in Rodents and Humans
- First Published April 1, 2004
LETTER
Occurrence and Consequences of Coding Sequence Insertions and Deletions in Mammalian Genomes
- First Published April 1, 2004
LETTER
Elevated Rates of Protein Secretion, Evolution, and Disease Among Tissue-Specific Genes
- First Published January 5, 2004
LETTER
Predicting Protein Cellular Localization Using a Domain Projection Method
- First Published August 1, 2002
LETTER
Systematic Identification of Novel Protein Domain Families Associated with Nuclear Functions
- First Published January 1, 2002
METHODS
SGP-1: Prediction and Validation of Homologous Genes Based on Sequence Alignments
- First Published September 1, 2001
LETTER
Kua, a Newly Identified Gene" > Fusion of the Human Gene for the Polyubiquitination Coeffector UEV1 with Kua, a Newly Identified Gene
- First Published November 8, 2000
METHODS
An Assessment of Gene Prediction Accuracy in Large DNA Sequences
- First Published October 1, 2000