Resource
Precision environmental health monitoring by longitudinal exposome and multi-omics profiling
- First Published June 6, 2022
Method
Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome
- First Published December 1, 2017
Corrigendum
Corrigendum: Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells
- First Published September 1, 2015
Research
Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells
- First Published March 19, 2015
Research
RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts
- First Published December 18, 2014
Research
Violation of the 12/23 rule of genomic V(D)J recombination is common in lymphocytes
- First Published November 3, 2014
Research
Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia" > Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia
- First Published September 15, 2014
Resource
Annotation of functional variation in personal genomes using RegulomeDB
- First Published September 5, 2012
Resource
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
- First Published September 5, 2012
Method
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
- First Published September 5, 2012
Research
A highly integrated and complex PPARGC1A transcription factor binding network in HepG2 cells
- First Published September 5, 2012
Research
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
- First Published September 5, 2012
Resource
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- First Published September 5, 2012
Method
Linking disease associations with regulatory information in the human genome
- First Published September 5, 2012
Research
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
- First Published September 5, 2012
Method
Preparation of high-quality next-generation sequencing libraries from picogram quantities of target DNA
- First Published November 16, 2011
Research
Natural genetic variation caused by small insertions and deletions in the human genome
- First Published April 1, 2011
Resource
CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing
- First Published February 7, 2011
Research
C. elegans" > Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans
- First Published December 22, 2010
Method
C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data" > Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data
- First Published December 22, 2010
Resource
Candida albicans using RNA-seq" > Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq
- First Published September 1, 2010
Research
A ChIP-seq defined genome-wide map of vitamin D receptor binding: Associations with disease and evolution
- First Published August 24, 2010
Research
Massive turnover of functional sequence in human and other mammalian genomes
- First Published August 6, 2010
Method
Genome assembly quality: Assessment and improvement using the neutral indel model
- First Published March 19, 2010
Methods
MSB: A mean-shift-based approach for the analysis of structural variation in the genome
- First Published November 26, 2008
LETTER
Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding
- First Published September 11, 2008
LETTER
Reduced purifying selection prevails over positive selection in human copy number variant evolution
- First Published August 7, 2008
LETTER
A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3′ end RNA polyadenylation
- First Published May 16, 2008
Platypus Special/Letter
Defensins and the convergent evolution of platypus and reptile venom genes
- First Published May 7, 2008
LETTER
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
- First Published February 7, 2008
12 | Genomes/Letter
Drosophila genomes" > Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes
- First Published November 7, 2007
LETTER
Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions
- First Published June 13, 2007
LETTER
Structured RNAs in the ENCODE selected regions of the human genome
- First Published June 13, 2007
Methods
Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies
- First Published June 13, 2007
Methods
Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE)
- First Published June 13, 2007
ARTICLE
The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
- First Published June 13, 2007
ARTICLE
Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome
- First Published June 13, 2007
PERSPECTIVE
What is a gene, post-ENCODE? History and updated definition
- First Published June 13, 2007
ARTICLE
Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
- First Published March 26, 2007
Methods
Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome
- First Published November 21, 2006
Dog Special/Letters
Hotspots of mutation and breakage in dog and human chromosomes
- First Published December 8, 2005
RESOURCE
Large-Scale Mutagenesis of the Yeast Genome Using a Tn7-Derived Multipurpose Transposon
- First Published October 1, 2004
LETTER
Comparative Evolutionary Genomics of Androgen-Binding Protein Genes
- First Published July 15, 2004
LETTER
Evolution and Comparative Genomics of Odorant- and Pheromone-Associated Genes in Rodents
- First Published April 1, 2004
LETTER
Occurrence and Consequences of Coding Sequence Insertions and Deletions in Mammalian Genomes
- First Published April 1, 2004
LETTER
Elevated Rates of Protein Secretion, Evolution, and Disease Among Tissue-Specific Genes
- First Published January 5, 2004
LETTER
Predicting Protein Cellular Localization Using a Domain Projection Method
- First Published August 1, 2002
LETTER
Systematic Identification of Novel Protein Domain Families Associated with Nuclear Functions
- First Published January 1, 2002
