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Method

Pangenome-based genome inference using integer programming

  • Ghanshyam Chandra
  • Md Helal Hossen
  • Stephan Scholz
  • Alexander T. Dilthey
  • Daniel Gibney
  • Chirag Jain
  • First Published August 21, 2025
Method

Telomere-to-telomere assembly by preserving contained reads

  • Sudhanva Shyam Kamath
  • Mehak Bindra
  • Debnath Pal
  • Chirag Jain
  • First Published October 15, 2024
Method

Haplotype-aware sequence alignment to pangenome graphs

  • Ghanshyam Chandra
  • Daniel Gibney
  • Chirag Jain
  • First Published July 16, 2024
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