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Research

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

  • Weisheng Wu
  • Yong Cheng
  • Cheryl A. Keller
  • Jason Ernst
  • Swathi Ashok Kumar
  • Tejaswini Mishra Christapher Morrissey Christine M. Dorman Kuan-Bei Chen Daniela Drautz Belinda Giardine Yoichiro Shibata Lingyun Song Max Pimkin Gregory E. Crawford Terrence S. Furey Manolis Kellis Webb Miller James Taylor Stephan C. Schuster Yu Zhang
  • ... [+16 authors] ...,
  • Francesca Chiaromonte
  • Gerd A. Blobel
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published July 27, 2011
Method

Genome-wide identification of conserved regulatory function in diverged sequences

  • Leila Taher
  • David M. McGaughey
  • Samantha Maragh
  • Ivy Aneas
  • Seneca L. Bessling
  • Webb Miller
  • Marcelo A. Nobrega
  • Andrew S. McCallion
  • Ivan Ovcharenko
  • First Published May 31, 2011
Research

Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes

  • Axel M. Hillmer
  • Fei Yao
  • Koichiro Inaki
  • Wah Heng Lee
  • Pramila N. Ariyaratne
  • Audrey S.M. Teo Xing Yi Woo Zhenshui Zhang Hao Zhao Leena Ukil Jieqi P. Chen Feng Zhu Jimmy B.Y. So Manuel Salto-Tellez Wan Ting Poh Kelson F.B. Zawack Niranjan Nagarajan Song Gao Guoliang Li Vikrant Kumar Hui Ping J. Lim Yee Yen Sia Chee Seng Chan See Ting Leong Say Chuan Neo Poh Sum D. Choi Hervé Thoreau Patrick B.O. Tan Atif Shahab Xiaoan Ruan Jonas Bergh Per Hall Valère Cacheux-Rataboul Chia-Lin Wei Khay Guan Yeoh
  • ... [+30 authors] ...,
  • Wing-Kin Sung
  • Guillaume Bourque
  • Edison T. Liu
  • Yijun Ruan
  • First Published April 5, 2011
Letter

Dynamic changes in the human methylome during differentiation

  • Louise Laurent
  • Eleanor Wong
  • Guoliang Li
  • Tien Huynh
  • Aristotelis Tsirigos
  • Chin Thing Ong Hwee Meng Low
  • ... [+2 authors] ...,
  • Ken Wing Kin Sung
  • Isidore Rigoutsos
  • Jeanne Loring
  • Chia-Lin Wei
  • First Published February 4, 2010
Article

Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

  • Yong Cheng
  • Weisheng Wu
  • Swathi Ashok Kumar
  • Duonan Yu
  • Wulan Deng
  • Tamara Tripic David C. King Kuan-Bei Chen Ying Zhang Daniela Drautz Belinda Giardine Stephan C. Schuster Webb Miller Francesca Chiaromonte
  • ... [+9 authors] ...,
  • Yu Zhang
  • Gerd A. Blobel
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published November 3, 2009
Next-Generation DNA Sequencing/Review

Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses

  • Melissa J. Fullwood
  • Chia-Lin Wei
  • Edison T. Liu
  • Yijun Ruan
  • First Published April 1, 2009
LETTER

Thylacinus cynocephalus)" > The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)

  • Webb Miller
  • Daniela I. Drautz
  • Jan E. Janecka
  • Arthur M. Lesk
  • Aakrosh Ratan
  • Lynn P. Tomsho Mike Packard Yeting Zhang Lindsay R. McClellan Ji Qi Fangqing Zhao M. Thomas P. Gilbert Love Dalén Juan Luis Arsuaga Per G.P. Ericson Daniel H. Huson
  • ... [+11 authors] ...,
  • Kristofer M. Helgen
  • William J. Murphy
  • Anders Götherström
  • Stephan C. Schuster
  • First Published January 12, 2009
LETTER

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

  • Yong Cheng
  • David C. King
  • Louis C. Dore
  • Xinmin Zhang
  • Yuepin Zhou
  • Ying Zhang Christine Dorman Demesew Abebe Swathi A. Kumar Francesca Chiaromonte
  • ... [+5 authors] ...,
  • Webb Miller
  • Roland D. Green
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published September 25, 2008
LETTER

Evolution of the mammalian transcription factor binding repertoire via transposable elements

  • Guillaume Bourque
  • Bernard Leong
  • Vinsensius B. Vega
  • Xi Chen
  • Yen Ling Lee
  • Kandhadayar G. Srinivasan Joon-Lin Chew
  • ... [+2 authors] ...,
  • Yijun Ruan
  • Chia-Lin Wei
  • Huck Hui Ng
  • Edison T. Liu
  • First Published August 5, 2008
RESOURCE

28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

  • Webb Miller
  • Kate Rosenbloom
  • Ross C. Hardison
  • Minmei Hou
  • James Taylor
  • Brian Raney Richard Burhans David C. King Robert Baertsch Daniel Blankenberg Sergei L. Kosakovsky Pond Anton Nekrutenko Belinda Giardine Robert S. Harris Svitlana Tyekucheva Mark Diekhans Thomas H. Pringle William J. Murphy Arthur Lesk George M. Weinstock Kerstin Lindblad-Toh Richard A. Gibbs
  • ... [+17 authors] ...,
  • Eric S. Lander
  • Adam Siepel
  • David Haussler
  • W. James Kent
  • First Published November 5, 2007
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