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Resource

An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes

Chong Li
Marc Jan Bonder
Sabriya Syed
Matthew Jensen
Mark B. Gerstein
Michael C. Zody Mark J.P. Chaisson Michael E. Talkowski Tobias Marschall
... [+4 authors] ...,
Jan O. Korbel
Evan E. Eichler
Charles Lee
Xinghua Shi

First Published December 5, 2024

Method

Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases

Prashant S. Emani
Maya N. Geradi
Gamze Gürsoy
Monica R. Grasty
Andrew Miranker
Mark B. Gerstein

First Published December 14, 2023

Research

Alu insertion variants alter gene transcript levels" > Alu insertion variants alter gene transcript levels

Lindsay M. Payer
Jared P. Steranka
Maria S. Kryatova
Giacomo Grillo
Mathieu Lupien
Pedro P. Rocha
Kathleen H. Burns

First Published November 19, 2021

Method

cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks" > Identifying clusters of cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks

Seyed Ali Madani Tonekaboni
Parisa Mazrooei
Victor Kofia
Benjamin Haibe-Kains
Mathieu Lupien

First Published September 18, 2019

Research

High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma

Michael J. Johnston
Ana Nikolic
Nicoletta Ninkovic
Paul Guilhamon
Florence M.G. Cavalli
Steven Seaman Franz J. Zemp John Lee Aly Abdelkareem Katrina Ellestad Alex Murison Michelle M. Kushida Fiona J. Coutinho Yussanne Ma Andrew J. Mungall Richard Moore Marco A. Marra Michael D. Taylor Peter B. Dirks Trevor J. Pugh Sorana Morrissy
... [+16 authors] ...,
Bradley St Croix
Douglas J. Mahoney
Mathieu Lupien
Marco Gallo

First Published June 27, 2019

Research

Arabidopsis thaliana transposons and gene regulatory regions" > Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions

Kyuha Choi
Xiaohui Zhao
Andrew J. Tock
Christophe Lambing
Charles J. Underwood
Thomas J. Hardcastle Heïdi Serra Juhyun Kim Hyun Seob Cho Jaeil Kim Piotr A. Ziolkowski
... [+6 authors] ...,
Nataliya E. Yelina
Ildoo Hwang
Robert A. Martienssen
Ian R. Henderson

First Published March 12, 2018

Research

Arabidopsis thaliana centromeres via loss of H3K9me2 and non-CG DNA methylation" > Epigenetic activation of meiotic recombination near Arabidopsis thaliana centromeres via loss of H3K9me2 and non-CG DNA methylation

Charles J. Underwood
Kyuha Choi
Christophe Lambing
Xiaohui Zhao
Heïdi Serra
Filipe Borges Joe Simorowski
... [+2 authors] ...,
Evan Ernst
Yannick Jacob
Ian R. Henderson
Robert A. Martienssen

First Published March 12, 2018

Research

cis-regulatory modules controlling liver functions" > The logic of transcriptional regulator recruitment architecture at cis-regulatory modules controlling liver functions

Julie Dubois-Chevalier
Vanessa Dubois
Hélène Dehondt
Parisa Mazrooei
Claire Mazuy
Aurélien A. Sérandour Céline Gheeraert Penderia Guillaume Eric Baugé Bruno Derudas Nathalie Hennuyer Réjane Paumelle Guillemette Marot Jason S. Carroll
... [+9 authors] ...,
Mathieu Lupien
Bart Staels
Philippe Lefebvre
Jérôme Eeckhoute

First Published April 11, 2017

Research

Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition

Vladimir Despic
Mario Dejung
Mengting Gu
Jayanth Krishnan
Jing Zhang
Lydia Herzel
... [+1 authors] ...,
Korinna Straube
Mark B. Gerstein
Falk Butter
Karla M. Neugebauer

First Published April 5, 2017

Research

Pangolin genomes and the evolution of mammalian scales and immunity

Siew Woh Choo
Mike Rayko
Tze King Tan
Ranjeev Hari
Aleksey Komissarov
Wei Yee Wee Andrey A. Yurchenko Sergey Kliver Gaik Tamazian Agostinho Antunes Richard K. Wilson Wesley C. Warren Klaus-Peter Koepfli Patrick Minx Ksenia Krasheninnikova Antoinette Kotze Desire L. Dalton Elaine Vermaak Ian C. Paterson Pavel Dobrynin Frankie Thomas Sitam Jeffrine J. Rovie-Ryan Warren E. Johnson Aini Mohamed Yusoff Shu-Jin Luo Kayal Vizi Karuppannan Gang Fang Deyou Zheng
... [+23 authors] ...,
Mark B. Gerstein
Leonard Lipovich
Stephen J. O'Brien
Guat Jah Wong

First Published August 10, 2016

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Your search for returned 28 results

Resource

An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes

Method

Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases

Research

Alu insertion variants alter gene transcript levels" > Alu insertion variants alter gene transcript levels

Method

cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks" > Identifying clusters of cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks

Research

High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma

Research

Arabidopsis thaliana transposons and gene regulatory regions" > Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions

Research

Arabidopsis thaliana centromeres via loss of H3K9me2 and non-CG DNA methylation" > Epigenetic activation of meiotic recombination near Arabidopsis thaliana centromeres via loss of H3K9me2 and non-CG DNA methylation

Research

cis-regulatory modules controlling liver functions" > The logic of transcriptional regulator recruitment architecture at cis-regulatory modules controlling liver functions

Research

Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition

Research

Pangolin genomes and the evolution of mammalian scales and immunity

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