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Improved definition of the mouse transcriptome via targeted RNA sequencing

  • Giovanni Bussotti
  • Tommaso Leonardi
  • Michael B. Clark
  • Tim R. Mercer
  • Joanna Crawford
  • Lorenzo Malquori
  • ... [+1 authors] ...,
  • Cedric Notredame
  • Marcel E. Dinger
  • John S. Mattick
  • Anton J. Enright
  • First Published May 2, 2016
Resource

Alignathon: a competitive assessment of whole-genome alignment methods

  • Dent Earl
  • Ngan Nguyen
  • Glenn Hickey
  • Robert S. Harris
  • Stephen Fitzgerald
  • Kathryn Beal Igor Seledtsov Vladimir Molodtsov Brian J. Raney Hiram Clawson Jaebum Kim Carsten Kemena Jia-Ming Chang Ionas Erb Alexander Poliakov Minmei Hou Javier Herrero William James Kent Victor Solovyev Aaron E. Darling Jian Ma Cedric Notredame
  • ... [+17 authors] ...,
  • Michael Brudno
  • Inna Dubchak
  • David Haussler
  • Benedict Paten
  • First Published October 1, 2014
Resource

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

  • Thomas Derrien
  • Rory Johnson
  • Giovanni Bussotti
  • Andrea Tanzer
  • Sarah Djebali
  • Hagen Tilgner Gregory Guernec David Martin Angelika Merkel David G. Knowles Julien Lagarde Lavanya Veeravalli Xiaoan Ruan Yijun Ruan Timo Lassmann Piero Carninci James B. Brown Leonard Lipovich Jose M. Gonzalez Mark Thomas Carrie A. Davis Ramin Shiekhattar Thomas R. Gingeras
  • ... [+18 authors] ...,
  • Tim J. Hubbard
  • Cedric Notredame
  • Jennifer Harrow
  • Roderic Guigó
  • First Published September 5, 2012
Resource

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

  • Aaron McKenna
  • Matthew Hanna
  • Eric Banks
  • Andrey Sivachenko
  • Kristian Cibulskis
  • Andrew Kernytsky Kiran Garimella
  • ... [+2 authors] ...,
  • David Altshuler
  • Stacey Gabriel
  • Mark Daly
  • Mark A. DePristo
  • First Published July 19, 2010
RESOURCE

Whole population, genome-wide mapping of hidden relatedness

  • Alexander Gusev
  • Jennifer K. Lowe
  • Markus Stoffel
  • Mark J. Daly
  • David Altshuler
  • Jan L. Breslow
  • Jeffrey M. Friedman
  • Itsik Pe'er
  • First Published October 29, 2008
Methods

Calibrating a coalescent simulation of human genome sequence variation

  • Stephen F. Schaffner
  • Catherine Foo
  • Stacey Gabriel
  • David Reich
  • Mark J. Daly
  • David Altshuler
  • First Published October 26, 2005
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