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Resource

Improved definition of the mouse transcriptome via targeted RNA sequencing

  • Giovanni Bussotti
  • Tommaso Leonardi
  • Michael B. Clark
  • Tim R. Mercer
  • Joanna Crawford
  • Lorenzo Malquori
  • ... [+1 authors] ...,
  • Cedric Notredame
  • Marcel E. Dinger
  • John S. Mattick
  • Anton J. Enright
  • First Published May 2, 2016
Method

The use of exome capture RNA-seq for highly degraded RNA with application to clinical cancer sequencing

  • Marcin Cieslik
  • Rashmi Chugh
  • Yi-Mi Wu
  • Ming Wu
  • Christine Brennan
  • Robert Lonigro Fengyun Su Rui Wang Javed Siddiqui Rohit Mehra
  • ... [+5 authors] ...,
  • Xuhong Cao
  • David Lucas
  • Arul M. Chinnaiyan
  • Dan Robinson
  • First Published August 7, 2015
Resource

The landscape of antisense gene expression in human cancers

  • O. Alejandro Balbin
  • Rohit Malik
  • Saravana M. Dhanasekaran
  • John R. Prensner
  • Xuhong Cao
  • Yi-Mi Wu Dan Robinson Rui Wang
  • ... [+3 authors] ...,
  • Guoan Chen
  • David G. Beer
  • Alexey I. Nesvizhskii
  • Arul M. Chinnaiyan
  • First Published June 10, 2015
Resource

Alignathon: a competitive assessment of whole-genome alignment methods

  • Dent Earl
  • Ngan Nguyen
  • Glenn Hickey
  • Robert S. Harris
  • Stephen Fitzgerald
  • Kathryn Beal Igor Seledtsov Vladimir Molodtsov Brian J. Raney Hiram Clawson Jaebum Kim Carsten Kemena Jia-Ming Chang Ionas Erb Alexander Poliakov Minmei Hou Javier Herrero William James Kent Victor Solovyev Aaron E. Darling Jian Ma Cedric Notredame
  • ... [+17 authors] ...,
  • Michael Brudno
  • Inna Dubchak
  • David Haussler
  • Benedict Paten
  • First Published October 1, 2014
Research

HIV infection reveals widespread expansion of novel centromeric human endogenous retroviruses

  • Rafael Contreras-Galindo
  • Mark H. Kaplan
  • Shirley He
  • Angie C. Contreras-Galindo
  • Marta J. Gonzalez-Hernandez
  • Ferdinand Kappes Derek Dube Susana M. Chan Dan Robinson Fan Meng Manhong Dai
  • ... [+6 authors] ...,
  • Scott D. Gitlin
  • Arul M. Chinnaiyan
  • Gilbert S. Omenn
  • David M. Markovitz
  • First Published May 8, 2013
Resource

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

  • Thomas Derrien
  • Rory Johnson
  • Giovanni Bussotti
  • Andrea Tanzer
  • Sarah Djebali
  • Hagen Tilgner Gregory Guernec David Martin Angelika Merkel David G. Knowles Julien Lagarde Lavanya Veeravalli Xiaoan Ruan Yijun Ruan Timo Lassmann Piero Carninci James B. Brown Leonard Lipovich Jose M. Gonzalez Mark Thomas Carrie A. Davis Ramin Shiekhattar Thomas R. Gingeras
  • ... [+18 authors] ...,
  • Tim J. Hubbard
  • Cedric Notredame
  • Jennifer Harrow
  • Roderic Guigó
  • First Published September 5, 2012
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