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RefSeq Functional Elements as experimentally assayed nongenic reference standards and functional interactions in human and mouse

  • Catherine M. Farrell
  • Tamara Goldfarb
  • Sanjida H. Rangwala
  • Alexander Astashyn
  • Olga D. Ermolaeva
  • Vichet Hem Kenneth S. Katz Vamsi K. Kodali
  • ... [+3 authors] ...,
  • Frank Ludwig
  • Craig L. Wallin
  • Kim D. Pruitt
  • Terence D. Murphy
  • First Published December 7, 2021

Complex selection on 5′ splice sites in intron-rich organisms

  • Manuel Irimia
  • Scott William Roy
  • Daniel E. Neafsey
  • Josep F. Abril
  • Jordi Garcia-Fernandez
  • Eugene V. Koonin
  • First Published September 10, 2009

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

  • Kim D. Pruitt
  • Jennifer Harrow
  • Rachel A. Harte
  • Craig Wallin
  • Mark Diekhans
  • Donna R. Maglott Steve Searle Catherine M. Farrell Jane E. Loveland Barbara J. Ruef Elizabeth Hart Marie-Marthe Suner Melissa J. Landrum Bronwen Aken Sarah Ayling Robert Baertsch Julio Fernandez-Banet Joshua L. Cherry Val Curwen Michael DiCuccio Manolis Kellis Jennifer Lee Michael F. Lin Michael Schuster Andrew Shkeda Clara Amid Garth Brown Oksana Dukhanina Adam Frankish Jennifer Hart Bonnie L. Maidak Jonathan Mudge Michael R. Murphy Terence Murphy Jeena Rajan Bhanu Rajput Lillian D. Riddick Catherine Snow Charles Steward David Webb Janet A. Weber Laurens Wilming Wenyu Wu Ewan Birney David Haussler
  • ... [+40 authors] ...,
  • Tim Hubbard
  • James Ostell
  • Richard Durbin
  • David Lipman
  • First Published June 4, 2009

Evolution of protein domain promiscuity in eukaryotes

  • Malay Kumar Basu
  • Liran Carmel
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published January 29, 2008

Three distinct modes of intron dynamics in the evolution of eukaryotes

  • Liran Carmel
  • Yuri I. Wolf
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published May 10, 2007

Evolutionarily conserved genes preferentially accumulate introns

  • Liran Carmel
  • Igor B. Rogozin
  • Yuri I. Wolf
  • Eugene V. Koonin
  • First Published May 10, 2007

Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns

  • Tae-young Roh
  • Gang Wei
  • Catherine M. Farrell
  • Keji Zhao
  • First Published November 29, 2006

Origins and impact of constraints in evolution of gene families

  • Boris E. Shakhnovich
  • Eugene V. Koonin
  • First Published October 19, 2006

Coelomata and Not Ecdysozoa: Evidence From Genome-Wide Phylogenetic Analysis

  • Yuri I. Wolf
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published January 5, 2004

Gene Loss, Protein Sequence Divergence, Gene Dispensability, Expression Level, and Interactivity Are Correlated in Eukaryotic Evolution

  • Dmitri M. Krylov
  • Yuri I. Wolf
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published October 2, 2003
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