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Resource

Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution

  • Flavia Angela Maria Maggiolini
  • Ashley D. Sanders
  • Colin James Shew
  • Arvis Sulovari
  • Yafei Mao
  • Marta Puig Claudia Rita Catacchio Maria Dellino Donato Palmisano Ludovica Mercuri Miriana Bitonto David Porubský Mario Cáceres Evan E. Eichler
  • ... [+9 authors] ...,
  • Mario Ventura
  • Megan Y. Dennis
  • Jan O. Korbel
  • Francesca Antonacci
  • First Published October 22, 2020
Resource

A limited set of transcriptional programs define major cell types

  • Alessandra Breschi
  • Manuel Muñoz-Aguirre
  • Valentin Wucher
  • Carrie A. Davis
  • Diego Garrido-Martín
  • Sarah Djebali Jesse Gillis Dmitri D. Pervouchine Anna Vlasova Alexander Dobin Chris Zaleski Jorg Drenkow Cassidy Danyko Alexandra Scavelli
  • ... [+9 authors] ...,
  • Ferran Reverter
  • Michael P. Snyder
  • Thomas R. Gingeras
  • Roderic Guigó
  • First Published July 29, 2020
Method

Determining the impact of uncharacterized inversions in the human genome by droplet digital PCR

  • Marta Puig
  • Jon Lerga-Jaso
  • Carla Giner-Delgado
  • Sarai Pacheco
  • David Izquierdo
  • Alejandra Delprat
  • ... [+1 authors] ...,
  • Magdalena Gayà-Vidal
  • Jack F. Regan
  • George Karlin-Neumann
  • Mario Cáceres
  • First Published May 18, 2020
Resource

Dynamics of microRNA expression during mouse prenatal development

  • Sorena Rahmanian
  • Rabi Murad
  • Alessandra Breschi
  • Weihua Zeng
  • Mark Mackiewicz
  • Brian Williams Carrie A. Davis Brian Roberts Sarah Meadows Dianna Moore Diane Trout Chris Zaleski Alex Dobin Lei-Hoon Sei Jorg Drenkow Alex Scavelli Thomas R. Gingeras
  • ... [+12 authors] ...,
  • Barbara J. Wold
  • Richard M. Myers
  • Roderic Guigó
  • Ali Mortazavi
  • First Published October 23, 2019
Research

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

  • Chao Cheng
  • Roger Alexander
  • Renqiang Min
  • Jing Leng
  • Kevin Y. Yip
  • Joel Rozowsky Koon-Kiu Yan Xianjun Dong Sarah Djebali Yijun Ruan Carrie A. Davis Piero Carninci Timo Lassman Thomas R. Gingeras Roderic Guigó
  • ... [+10 authors] ...,
  • Ewan Birney
  • Zhiping Weng
  • Michael Snyder
  • Mark Gerstein
  • First Published September 5, 2012
Resource

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

  • Thomas Derrien
  • Rory Johnson
  • Giovanni Bussotti
  • Andrea Tanzer
  • Sarah Djebali
  • Hagen Tilgner Gregory Guernec David Martin Angelika Merkel David G. Knowles Julien Lagarde Lavanya Veeravalli Xiaoan Ruan Yijun Ruan Timo Lassmann Piero Carninci James B. Brown Leonard Lipovich Jose M. Gonzalez Mark Thomas Carrie A. Davis Ramin Shiekhattar Thomas R. Gingeras
  • ... [+18 authors] ...,
  • Tim J. Hubbard
  • Cedric Notredame
  • Jennifer Harrow
  • Roderic Guigó
  • First Published September 5, 2012
Research

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

  • Hagen Tilgner
  • David G. Knowles
  • Rory Johnson
  • Carrie A. Davis
  • Sudipto Chakrabortty
  • Sarah Djebali
  • ... [+1 authors] ...,
  • João Curado
  • Michael Snyder
  • Thomas R. Gingeras
  • Roderic Guigó
  • First Published September 5, 2012
Resource

Synthetic spike-in standards for RNA-seq experiments

  • Lichun Jiang
  • Felix Schlesinger
  • Carrie A. Davis
  • Yu Zhang
  • Renhua Li
  • Marc Salit
  • Thomas R. Gingeras
  • Brian Oliver
  • First Published August 4, 2011
Resource

Drosophila cell lines" > The transcriptional diversity of 25 Drosophila cell lines

  • Lucy Cherbas
  • Aarron Willingham
  • Dayu Zhang
  • Li Yang
  • Yi Zou
  • Brian D. Eads Joseph W. Carlson Jane M. Landolin Philipp Kapranov Jacqueline Dumais Anastasia Samsonova Jeong-Hyeon Choi Johnny Roberts Carrie A. Davis Haixu Tang Marijke J. van Baren Srinka Ghosh Alexander Dobin Kim Bell Wei Lin Laura Langton Michael O. Duff Aaron E. Tenney Chris Zaleski Michael R. Brent Roger A. Hoskins Thomas C. Kaufman Justen Andrews Brenton R. Graveley
  • ... [+24 authors] ...,
  • Norbert Perrimon
  • Susan E. Celniker
  • Thomas R. Gingeras
  • Peter Cherbas
  • First Published December 22, 2010
LETTER

Drosophila buzzatii Genome Induced by Transposon Insertions" > Molecular Characterization of Two Natural Hotspots in the Drosophila buzzatii Genome Induced by Transposon Insertions

  • Mario Cáceres
  • Marta Puig
  • Alfredo Ruiz
  • First Published July 12, 2001
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